Hg_chrom2_TN10mRNA_3883
Organism: Heterodera glycines Gene Locus: chr2:8732580-8738217 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 1.504 | 0.504 | 0.717 | 0.654 | 2.665 | 1.127 | 1.27 | 0.77 | 0.811 | 0.49 | 2.038 | 1.283 | 1.688 | 0.896 | 1.353 | 0.947 | 0.735 | 0.355 | 0.136 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3688
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KGKKSKKDKP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.845
|
0.130
|
0.012
|
0.441
|
0.047
|
0.038
|
0.065
|
0.004
|
0.070
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001860
|
1.000
|
3.000
|
Hsc_gene_4949.t2;Hsc_gene_4949.t3;Hsc_gene_4949.t4
|
Hsc_gene_4949.t1;Hsc_gene_4949.t2;Hsc_gene_4949.t3;Hsc_gene_4949.t4
|
— |
G5EC36.1 LIM/homeobox protein lim-7 [Caenorhabditis elegans]
|
KAI1721738.1 LIM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355|GO:0045944|GO:0048665
|
GO:0008150_0.901|GO:0009987_0.792|GO:0032502_0.773|GO:0048856_0.773|GO:0005575_0.767|GO:0110165_0.758|GO:0032501_0.752|GO:0007275_0.733|GO:0048731_0.719|GO:0005622_0.718|GO:0043226_0.711|GO:0043229_0.692|GO:0016020_0.657|GO:0065007_0.656|GO:0050789_0.654|GO:0050794_0.615|GO:0030154_0.614|GO:0048869_0.614|GO:0003674_0.581|GO:0005488_0.581|GO:0043227_0.572|GO:0048513_0.569|GO:0043231_0.568|GO:0007399_0.567|GO:0005634_0.562|GO:0003676_0.545|GO:0097159_0.545|GO:0022008_0.533|GO:0008152_0.525|GO:0019222_0.525|GO:0044238_0.525|GO:0080090_0.525|GO:0031323_0.521|GO:0044237_0.521|GO:0048699_0.516|GO:0043170_0.512|GO:0060255_0.512|GO:0003677_0.511|GO:0043565_0.511|GO:0009058_0.510|GO:0009889_0.510|GO:0030182_0.510|GO:0031326_0.510|GO:0044249_0.510|GO:0006139_0.509|GO:0016070_0.509|GO:0019219_0.509|GO:0051252_0.509|GO:0090304_0.509|GO:0003690_0.508|GO:0009059_0.508|GO:0010556_0.508|GO:1990837_0.508|GO:0006351_0.505|GO:0006355_0.505|GO:0010467_0.505|GO:0010468_0.505|GO:0032774_0.505|GO:0034654_0.505|GO:0141187_0.505|GO:2001141_0.505
|
IPR001356+239-299_241-303_243-298_243-300+|IPR001781+1-48_2-42+|IPR009057+222-301+|IPR017970+274-297+|IPR047169+1-345+
|
SM00389+241-303+
|
PF00046+243-298+Homeodomain|PF00412+2-42+LIM_domain
|
G3DSA:1.10.10.60:FF:000041+236-304+insulin_gene_enhancer_protein_ISL-1
|
PTHR24204+1-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
53-433
|
1.000
|
1-52
|
1bw5_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
46487.070
|
8.257
|
9.500
|
16.859
|
8.083
|
48.961
|
51.039
|
10.162
|
6.697
|
57.044
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
657.425
|
1307.649
|
1501.734
|
703.243
|
264.204
|
201.931
|
271.257
|
2342.163
|
249.408
|
217.112
|
230.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.032
|
-0.985
|
-1.443
|
-0.374
|
0.436
|
3.430
|
-2.966
|
— | — | — | — | — |
No JSON data available for plots.