Hg_chrom2_TN10mRNA_3884
Organism: Heterodera glycines Gene Locus: chr2:8740198-8742268 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.316 | 1.263 | 0.658 | 1.716 | 0.679 | 1.044 | 0.593 | 1.357 | 1.508 | 1.101 | 0.48 | 1.331 | 1.76 | 1.74 | 1.478 | 2.198 | 0.371 | 0.754 | 1.044 | 0.133 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3689
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
65-85
|
1.000
|
— | — |
0.000
|
— | — |
0.327
|
0.206
|
0.020
|
0.735
|
0.061
|
0.198
|
0.177
|
0.142
|
0.158
|
0.162
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007121
|
2.000
|
0.000
|
0.000
|
Hsc_gene_4949.t2;Hsc_gene_4949.t3;Hsc_gene_4949.t4
|
— |
G5EC36.1 LIM/homeobox protein lim-7 [Caenorhabditis elegans]
|
KAK6027759.1 LIM domain protein [Ostertagia ostertagi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0045944|GO:0048665
|
GO:0008150_0.903|GO:0009987_0.781|GO:0032502_0.673|GO:0048856_0.673|GO:0032501_0.670|GO:0005575_0.658|GO:0110165_0.658|GO:0007275_0.625|GO:0048731_0.615|GO:0065007_0.597|GO:0005622_0.585|GO:0050789_0.584|GO:0043226_0.541|GO:0050794_0.534|GO:0016020_0.525|GO:0043229_0.523|GO:0048869_0.516|GO:0030154_0.513
|
IPR001781+86-148_87-141_88-123_88-145+|IPR047169+77-144+
|
SM00132+87-141+
|
PF00412+88-145+LIM_domain
|
— |
PTHR24204+77-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-52
|
1.000
|
53-221
|
2jtn_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
24702.310
|
8.440
|
9.000
|
20.814
|
10.860
|
47.964
|
52.036
|
13.122
|
7.692
|
53.394
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
99.279
|
219.260
|
205.394
|
107.130
|
37.888
|
28.663
|
48.858
|
147.393
|
64.375
|
88.094
|
77.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.324
|
-1.170
|
-0.830
|
-1.528
|
— |
0.778
|
2.258
|
-1.452
|
— | — | — |
6.591
|
— |
No JSON data available for plots.