Hg_chrom2_TN10mRNA_3885
Organism: Heterodera glycines Gene Locus: chr2:8743349-8745607 Feature type: polypeptideProtein Sequence
Length: 519
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.896 | 0.986 | 0.49 | 0.664 | 0.867 | 0.84 | 0.826 | 0.482 | 2.526 | 1.562 | 0.73 | 1.7 | 1.713 | 0.741 | 0.551 | 1.101 | 0.853 | 1.051 | 0.741 | 0.85 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3690
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.065
|
0.026
|
0.160
|
0.283
|
0.590
|
0.287
|
0.003
|
0.613
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000789
|
3.000
|
3.000
|
Hsc_gene_4950.t1;Hsc_gene_4955.t1;Hsc_gene_5007.t1
|
Hsc_gene_4950.t1
|
— |
Q8BHK3.1 Proton-coupled amino acid transporter 2 [Mus musculus]
|
KAI1712336.1 transmembrane amino acid transporter protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.868|GO:0005575_0.817|GO:0110165_0.817|GO:0009987_0.813|GO:0006810_0.799|GO:0051179_0.799|GO:0051234_0.799|GO:0055085_0.783|GO:0003674_0.774|GO:0016020_0.770|GO:0005215_0.736|GO:0022857_0.736|GO:0071944_0.650|GO:0005886_0.643|GO:0003333_0.615|GO:0006865_0.615|GO:0015171_0.586|GO:0043226_0.569|GO:0005622_0.553|GO:0005737_0.553|GO:0043227_0.544
|
IPR013057+65-483+
|
— |
PF01490+65-483+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+67-480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56
|
1.000
|
57-519
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
57055.260
|
6.623
|
0.500
|
16.378
|
10.983
|
36.802
|
63.198
|
8.478
|
7.900
|
47.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
418.225
|
20.253
|
74.418
|
74.371
|
219.012
|
876.241
|
220.982
|
609.475
|
17.233
|
1031.278
|
596.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.644
|
1.738
|
— |
1.528
|
2.014
|
-1.978
|
— |
-1.317
|
-6.065
|
— | — | — | — |
No JSON data available for plots.