Hg_chrom2_TN10mRNA_3887
Organism: Heterodera glycines Gene Locus: chr2:8755499-8785776 Feature type: polypeptideProtein Sequence
Length: 5,431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 0.972 | 0.954 | 0.698 | 1.274 | 1.185 | 0.743 | 1.243 | 0.97 | 1.386 | 0.753 | 2.069 | 1.432 | 0.772 | 1.263 | 1.036 | 0.746 | 0.87 | 0.892 | 0.801 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3692
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— |
KRRP,KRSR,RKKRRREGQVRRDKH,KAAIAERKKRRREGQVRR,KRGPSPLKKRFISSKKRHP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.108
|
0.181
|
0.039
|
0.301
|
0.679
|
0.351
|
0.309
|
0.006
|
0.580
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001861
|
1.000
|
3.000
|
Hsc_gene_4952.t1;Hsc_gene_4952.t2;Hsc_gene_4952.t3
|
Hsc_gene_4952.t1;Hsc_gene_4952.t2;Hsc_gene_4952.t3;Hsc_gene_4953.t1;Hsc_gene_4953.t2
|
— |
Q24498.3 Ryanodine receptor [Drosophila melanogaster]
|
KAH7730344.1 skeletal muscle ryanodine receptor isoform alpha [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005219|GO:0005262|GO:0005509|GO:0005515|GO:0006811|GO:0006816|GO:0006874|GO:0016020|GO:0055085|GO:0070588
|
GO:0005575_0.944|GO:0110165_0.944|GO:0008150_0.915|GO:0009987_0.884|GO:0003674_0.849|GO:0005622_0.845|GO:0051179_0.823|GO:0065007_0.823|GO:0006810_0.811|GO:0051234_0.811|GO:0016020_0.809|GO:0050789_0.809|GO:0071944_0.809|GO:0005886_0.805|GO:0050794_0.780|GO:0050896_0.758|GO:0051716_0.739|GO:0055085_0.717|GO:0007154_0.714|GO:0023052_0.714|GO:0043226_0.712|GO:0043229_0.695|GO:0006811_0.690|GO:0007165_0.681|GO:0034220_0.681|GO:0005737_0.662|GO:0005215_0.658|GO:0022857_0.658|GO:0098660_0.658|GO:0006812_0.654|GO:0043227_0.654|GO:0030001_0.651|GO:0005216_0.649|GO:0015075_0.649|GO:0015267_0.649|GO:0022803_0.649|GO:0098655_0.649|GO:0098662_0.643|GO:0035556_0.639|GO:0141124_0.634|GO:0022836_0.630|GO:0043231_0.630|GO:0015318_0.625|GO:0005261_0.624|GO:0008324_0.624|GO:0006816_0.616|GO:0005773_0.614|GO:0070588_0.614|GO:0022890_0.613|GO:0046873_0.613|GO:0015276_0.611|GO:0022834_0.611|GO:0019722_0.606|GO:0099094_0.597|GO:0005262_0.592|GO:0015085_0.592|GO:0005217_0.588|GO:0012505_0.588|GO:0015278_0.588|GO:0099604_0.588|GO:0042221_0.555|GO:0042592_0.522|GO:0005219_0.519|GO:0048763_0.519|GO:0031090_0.512|GO:0048878_0.506|GO:0019725_0.502
|
IPR000699+471-667_2337-2561+|IPR001870+603-824_1054-1235_1550-1767+|IPR002048+4447-4482_4451-4479_4454-4510_4455-4509_4486-4514+|IPR003032+874-962_986-1077_3086-3175_3199-3285+|IPR003877+689-823_691-821_1111-1234_1113-1233_1624-1766_1627-1764+|IPR005821+5191-5339+|IPR009460+4958-5071+|IPR011992+4436-4511+|IPR013320+691-822_1103-1232+|IPR013333+68-89_105-123_163-187_589-608_731-753_810-830_894-917_1026-1047+|IPR013662+4258-4371+|IPR014821+14-229+|IPR015925+10-5428+|IPR016093+107-161_168-226_236-290_237-420_296-390+|IPR018247+4460-4472_4495-4507+|IPR035762+1622-1763+|IPR035764+1099-1231+|IPR035910+2373-2454+|IPR036300+111-200_241-420+|IPR043136+667-851_1095-1272_1597-1781+|IPR048581+1859-2303+
|
SM00054+4451-4479_4486-4514+|SM00449+689-823_1111-1234_1624-1766+|SM00472+107-161_168-226_236-290_296-390+
|
PF00520+5191-5339+Ion_transport_protein|PF00622+691-821_1113-1233_1627-1764+SPRY_domain|PF01365+471-667_2337-2561+RIH_domain|PF02026+874-962_986-1077_3086-3175_3199-3285+RyR_domain|PF02815+237-420+MIR_domain|PF06459+4958-5071+Ryanodine_Receptor_TM_4-6|PF08454+4258-4371+RyR_and_IP3R_Homology_associated|PF08709+14-229+Inositol_1,4,5-trisphosphate/ryanodine_receptor|PF13499+4454-4510+EF-hand_domain_pair|PF21119+1859-2303+Ryanodine_receptor_junctional_solenoid_repeat
|
G3DSA:1.10.238.10:FF:000132+4376-4516+Ryanodine_receptor_44F|G3DSA:1.10.287.70:FF:000017+5217-5350+ryanodine_receptor_isoform_X2|G3DSA:1.10.490.160:FF:000003+871-974+Ryanodine_receptor,_isoform_E|G3DSA:1.10.490.160:FF:000006+3082-3202+Protein_CBR-LIPL-6|G3DSA:2.80.10.50:FF:000021+3-231+Ryanodine_receptor,_isoform_F|G3DSA:2.80.10.50:FF:000022+242-426+Ryanodine_receptor,_isoform_E
|
PTHR46399+10-5428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;1335-1613;2204-2255;4747-4926
|
4.000
|
10-1334;1614-2203;2256-4746;4927-5431
|
5l1d_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
613698.130
|
6.200
|
-26.500
|
26.533
|
11.526
|
47.137
|
52.863
|
13.644
|
12.889
|
46.916
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
3795.872
|
5190.999
|
9367.774
|
3754.769
|
1482.776
|
2512.189
|
1097.495
|
4036.783
|
3467.386
|
3715.357
|
3609.083
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
-0.604
|
-1.210
|
-1.372
|
0.775
|
-1.184
|
0.578
|
-1.736
|
— | — | — | — | — |
No JSON data available for plots.