Hg_chrom2_TN10mRNA_3888
Organism: Heterodera glycines Gene Locus: chr2:8786553-8790312 Feature type: polypeptideProtein Sequence
Length: 752
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.268 | 1.088 | 1.742 | 1.042 | 1.057 | 0.744 | 1.529 | 1.271 | 1.33 | 0.685 | 1.33 | 1.995 | 0.767 | 1.086 | 1.007 | 0.61 | 0.745 | 0.511 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3693
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.568
|
0.286
|
0.013
|
0.645
|
0.123
|
0.188
|
0.189
|
0.046
|
0.076
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007122
|
1.000
|
1.000
|
Hsc_gene_4954.t1
|
Hsc_gene_4954.t1
|
— | — |
XP_015912031.1 ATP-dependent RNA helicase DEAH11, chloroplastic [Parasteatoda tepidariorum];XP_015912032.1 ATP-dependent RNA helicase DEAH11, chloroplastic [Parasteatoda tepidariorum];XP_015912033.1 ATP-dependent RNA helicase DEAH11, chloroplastic [Parasteatoda tepidariorum];XP_015912035.1 ATP-dependent RNA helicase DEAH11, chloroplastic [Parasteatoda tepidariorum]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004842|GO:0016567
|
GO:0008150_0.842|GO:0005575_0.747|GO:0110165_0.747|GO:0005622_0.616|GO:0009987_0.580|GO:0005737_0.564|GO:0016020_0.555|GO:0008152_0.538|GO:0044238_0.513|GO:0003674_0.506
|
IPR001841+425-465+|IPR031127+373-627+|IPR044066+421-643+
|
— |
PF22191+598-627+IBR_domain
|
— |
PTHR11685+373-627+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-752
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
85390.500
|
6.021
|
-6.500
|
25.133
|
13.963
|
45.479
|
54.521
|
12.899
|
12.234
|
48.005
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
610.469
|
229.667
|
635.227
|
573.163
|
1247.269
|
733.129
|
1824.110
|
184.320
|
51.816
|
596.856
|
363.268
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.234
|
1.183
|
— |
1.091
|
-0.753
|
1.325
|
-2.100
|
3.450
|
-3.652
|
3.665
|
— | — | — |
No JSON data available for plots.