Hg_chrom2_TN10mRNA_3889
Organism: Heterodera glycines Gene Locus: chr2:8790786-8793607 Feature type: polypeptideProtein Sequence
Length: 520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 0.984 | 0.385 | 0.531 | 0.897 | 0.789 | 0.824 | 0.577 | 2.65 | 1.559 | 0.816 | 1.471 | 1.763 | 0.851 | 0.549 | 1.071 | 0.946 | 1.049 | 0.74 | 0.792 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3694
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.726
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.049
|
0.066
|
0.029
|
0.166
|
0.296
|
0.547
|
0.259
|
0.003
|
0.600
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000789
|
3.000
|
3.000
|
Hsc_gene_4950.t1;Hsc_gene_4955.t1;Hsc_gene_5007.t1
|
Hsc_gene_4955.t1
|
— |
Q8BHK3.1 Proton-coupled amino acid transporter 2 [Mus musculus]
|
KAF7637094.1 Aa_trans domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.896|GO:0005575_0.850|GO:0110165_0.850|GO:0009987_0.843|GO:0051179_0.822|GO:0051234_0.821|GO:0006810_0.820|GO:0016020_0.784|GO:0055085_0.776|GO:0003674_0.773|GO:0005215_0.727|GO:0022857_0.727|GO:0071944_0.644|GO:0005886_0.635|GO:0006865_0.615|GO:0003333_0.614|GO:0043226_0.591|GO:0015171_0.587|GO:0043227_0.563|GO:0005622_0.559|GO:0005737_0.559|GO:0043229_0.503|GO:0005773_0.502|GO:0043231_0.502
|
IPR013057+73-484+
|
— |
PF01490+73-484+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+73-481+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-55
|
1.000
|
56-520
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
57310.730
|
8.075
|
6.000
|
16.731
|
11.154
|
37.308
|
62.692
|
9.231
|
7.500
|
46.346
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
341.007
|
19.611
|
56.261
|
62.049
|
151.875
|
435.405
|
203.789
|
316.133
|
8.275
|
1018.777
|
585.705
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.288
|
1.525
|
— |
1.260
|
1.533
|
-1.089
|
— | — |
-7.088
|
— | — | — |
7.061
|
No JSON data available for plots.