Hg_chrom2_TN10mRNA_3891
Organism: Heterodera glycines Gene Locus: chr2:8796873-8801474 Feature type: polypeptideProtein Sequence
Length: 873
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.693 | 0.986 | 0.896 | 0.671 | 1.413 | 1.439 | 0.505 | 1.432 | 1.273 | 1.393 | 1.059 | 1.482 | 1.527 | 0.485 | 1.192 | 1.227 | 0.789 | 0.833 | 0.352 | 0.876 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3696
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
SSRKR,KKNSGFFAIGRADSRDKQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.289
|
0.100
|
0.012
|
0.594
|
0.244
|
0.523
|
0.512
|
0.082
|
0.220
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007123
|
1.000
|
1.000
|
Hsc_gene_4957.t1
|
Hsc_gene_4877.t1;Hsc_gene_4957.t1
|
— |
Q18286.4 Exocyst complex component 6 [Caenorhabditis elegans]
|
KAI1724168.1 exocyst complex subunit sec15-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0090522
|
GO:0008150_0.830|GO:0009987_0.783|GO:0005575_0.778|GO:0110165_0.778|GO:0016020_0.648|GO:0005622_0.642|GO:0071944_0.589|GO:0005737_0.533|GO:0005886_0.520
|
IPR007225+10-873_27-870+|IPR042044+658-798+|IPR042045+461-630+|IPR046361+463-835+|IPR048359+68-235+
|
— |
PF04091+463-835+Exocyst_complex_subunit_Sec15_C-terminal|PF20651+68-235+Exocyst_complex_component_EXOC6/Sec15,_N-terminal
|
G3DSA:1.20.58.670:FF:000002+658-801+Exocyst_complex_component
|
PTHR12702+27-870+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-873
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
100247.370
|
7.028
|
7.500
|
29.095
|
11.798
|
52.348
|
47.652
|
15.693
|
13.402
|
42.726
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1710.039
|
1798.062
|
1642.434
|
1560.673
|
1588.313
|
1648.800
|
1731.726
|
2073.702
|
1647.810
|
1729.170
|
1694.302
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.360
|
-0.342
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.