SCN Proteipedia

Hg_chrom2_TN10mRNA_3892

Organism: Heterodera glycines Gene Locus: chr2:8802061-8805471 Feature type: polypeptide

Protein Sequence

Length: 731

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.62	0.986	1.467	0.425	1.596	0.842	0.749	1.231	0.882	1.165	1.513	1.609	0.95	0.552	1.619	1.036	0.695	0.829	0.316	0.764	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3697	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.840

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKKR,SRRDRDERGRGISRENEEKSRKREHKSPKKKKKEKKHKRKSEKNDKRSKGKSSKRTRR	—	—	—	—	—	—	0.000	—	—	0.948	0.030	0.002	0.168	0.034	0.026	0.064	0.001	0.055	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003397	1.000	2.000	Hsc_gene_4958.t2;Hsc_gene_4958.t3	Hsc_gene_4958.t1;Hsc_gene_4958.t2;Hsc_gene_4958.t3;Hsc_gene_4965.t1	—	Q13523.3 Serine/threonine-protein kinase PRP4 homolog [Homo sapiens]	KAF7638280.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	-0.260

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468\|GO:0045292	GO:0005575_0.873\|GO:0008150_0.868\|GO:0110165_0.858\|GO:0009987_0.847\|GO:0005622_0.821\|GO:0065007_0.801\|GO:0050789_0.793\|GO:0003674_0.755\|GO:0050794_0.755\|GO:0043226_0.698\|GO:0043229_0.679\|GO:0003824_0.651\|GO:0140096_0.651\|GO:0016020_0.640\|GO:0016740_0.616\|GO:0008152_0.613\|GO:0043170_0.613\|GO:0016772_0.605\|GO:0004672_0.599\|GO:0016301_0.599\|GO:0016773_0.599\|GO:0048518_0.598\|GO:0044237_0.579\|GO:0044238_0.558\|GO:0048522_0.542\|GO:0050896_0.542\|GO:0023052_0.527\|GO:0051716_0.521\|GO:0005488_0.519\|GO:0043227_0.505	IPR000504+13-86_14-82_15-76+\|IPR000719+412-728_416-728+\|IPR008271+536-548+\|IPR011009+399-729+\|IPR012677+3-119+\|IPR035979+13-97+\|IPR044092+411-728+\|IPR050494+125-729+	SM00220+412-728+\|SM00360+14-82+	PF00069+416-728+Protein_kinase_domain\|PF00076+15-76+RNA_recognition_motif	G3DSA:1.10.510.10:FF:000078+469-729+Serine/threonine-protein_kinase_PRP4_homolog\|G3DSA:3.30.200.20:FF:000123+383-468+serine/threonine-protein_kinase_PRP4_homolog\|G3DSA:3.30.70.330:FF:001074+12-87+Splicing_factor,_arginine/serine-rich_7	PTHR24058+125-729+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-27;67-366	2.000	28-66;367-731	8y6o_Q	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.661	83794.590	7.895	11.000	38.030	8.892	57.045	42.955	20.383	17.647	45.007

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	3934.926	4612.606	5225.761	4206.535	3744.968	3286.930	3616.920	4972.173	4322.940	2848.387	3480.338

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.270	-0.204	-0.200	-0.174	0.149	0.490	-0.315	—	—	—	—	—

No JSON data available for plots.

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