SCN Proteipedia

Hg_chrom2_TN10mRNA_3893

Organism: Heterodera glycines Gene Locus: chr2:8805757-8808776 Feature type: polypeptide

Protein Sequence

Length: 676

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.757	0.998	0.753	1.428	0.912	0.91	0.669	1.627	1.085	1.279	0.807	1.305	1.274	0.996	1.268	1.205	0.946	0.852	1.365	1.044	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3698	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.915

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RKEGSGSMLNKKRMG	—	—	—	—	—	—	0.000	—	—	0.053	0.063	0.017	0.070	0.209	0.385	0.388	0.005	0.959	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007124	1.000	1.000	Hsc_gene_4959.t1	Hsc_gene_4959.t1	—	Q09630.1 Probable metabotropic glutamate receptor mgl-1 [Caenorhabditis elegans]	KAI1732138.1 receptor family ligand binding region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.971\|GO:0065007_0.913\|GO:0050789_0.900\|GO:0005575_0.885\|GO:0110165_0.885\|GO:0009987_0.880\|GO:0050794_0.826\|GO:0003674_0.824\|GO:0050896_0.791\|GO:0007154_0.775\|GO:0023052_0.772\|GO:0005488_0.748\|GO:0051716_0.726\|GO:0071944_0.719\|GO:0016020_0.717\|GO:0005886_0.706\|GO:0007165_0.694\|GO:0060089_0.657\|GO:0038023_0.650\|GO:0004888_0.646\|GO:0007186_0.622\|GO:0005622_0.619\|GO:0023051_0.593\|GO:0010646_0.592\|GO:0032501_0.582\|GO:0036094_0.582\|GO:0043167_0.582\|GO:0030054_0.573\|GO:0007166_0.567\|GO:0004930_0.563\|GO:0007267_0.547\|GO:0043168_0.544\|GO:0031406_0.537\|GO:0043177_0.537\|GO:0045202_0.534\|GO:0008066_0.533\|GO:0016595_0.533\|GO:0016597_0.533\|GO:0048583_0.506	IPR000162+10-25_389-403_544-558+\|IPR000337+348-370_393-414_432-455_485-508_508-529+\|IPR001828+7-171+\|IPR011500+245-296+\|IPR017978+315-564_320-584+\|IPR017979+268-290+\|IPR028082+7-208+\|IPR038550+244-320+\|IPR050726+7-587+	—	PF00003+315-564+7_transmembrane_sweet-taste_receptor_of_3_GCPR\|PF01094+7-171+Receptor_family_ligand_binding_region\|PF07562+245-296+Nine_Cysteines_Domain_of_family_3_GPCR	G3DSA:2.10.50.30:FF:000001+243-321+metabotropic_glutamate_receptor_1	PTHR24060+7-587+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	198-245	2.000	1-197;246-676	7epf_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.835	76506.780	8.366	24.000	24.408	13.166	46.450	53.550	14.793	9.615	49.704

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	238.264	258.317	385.938	275.281	217.936	234.856	616.286	331.888	80.632	111.743	98.410

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.350	—	-0.379	-0.369	—	1.403	0.396	1.036	—	—	—	—	—

No JSON data available for plots.

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