Hg_chrom2_TN10mRNA_3897
Organism: Heterodera glycines Gene Locus: chr2:8820608-8822426 Feature type: polypeptideProtein Sequence
Length: 554
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.462 | 0.756 | 0.427 | 0.373 | 4.663 | 0.602 | 1.074 | 0.271 | 0.562 | 0.268 | 2.68 | 0.531 | 0.752 | 0.417 | 1.179 | 0.413 | 1.243 | 0.684 | 0.139 | 0.159 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3702
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKREEQREKTEKRKEE,KRTKTTLAFFKEKGTKR,RKREEQRVTEKQNREKKE,KRKEEEKETDGKDGKEERK,RKEEEKETDGKDGKEERKR,KKVGKEEKKEEKGKEEKKVGKEEKKEEKGKEEKKVGKEEKKEEKGKEEKKVEKEEKKEEKGKEEKKVEKEEKKEEKGKEEKKVEKEEKKEEKGKEEKKV
|
— | — | — | — |
1-23
|
0.813
|
0.826
|
0.000
|
0.000
|
0.286
|
0.064
|
0.042
|
0.205
|
0.145
|
0.027
|
0.061
|
0.019
|
0.095
|
0.963
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003399
|
2.000
|
1.000
|
Hsc_gene_4963.t1
|
— | — | — |
CAD5220947.1 unnamed protein product [Bursaphelenchus okinawaensis];CAG9114347.1 unnamed protein product [Bursaphelenchus okinawaensis]
|
No
|
-0.620
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+516-554_517-554+
|
SM00254+516-554+
|
PF01549+516-554+ShK_domain-like
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-511
|
1.000
|
512-554
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
63904.000
|
4.667
|
-36.500
|
54.332
|
3.971
|
70.397
|
29.603
|
24.007
|
30.325
|
36.823
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
138.236
|
100.860
|
34.393
|
15.549
|
20.509
|
47.176
|
7.704
|
23.468
|
29.672
|
488.907
|
292.092
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.786
|
-2.833
|
-1.032
|
— |
1.219
|
-2.602
|
-1.121
|
-1.459
|
-4.199
|
— |
-4.388
|
— | — |