Hg_chrom2_TN10mRNA_3898
Organism: Heterodera glycines Gene Locus: chr2:8820890-8822426 Feature type: polypeptideProtein Sequence
Length: 462
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.453 | 0.604 | 0.472 | 0.448 | 5.519 | 0.666 | 1.16 | 0.108 | 0.337 | 0.205 | 2.886 | 0.382 | 0.361 | 0.208 | 1.193 | 0.309 | 1.029 | 0.558 | 0.167 | 0.191 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3702
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKREEQREKTEKRKEE,RKREEQRVTEKQNREKKE,KRKEEEKETDGKDGKEERK,RKEEEKETDGKDGKEERKR,KKVGKEEKKEEKGKEEKKVGKEEKKEEKGKEEKKVGKEEKKEEKGKEEKKVEKEEKKEEKGKEEKKVEKEEKKEEKGKEEKKVEKEEKKEEKGKEEKKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.317
|
0.063
|
0.031
|
0.216
|
0.170
|
0.037
|
0.072
|
0.015
|
0.074
|
0.952
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003399
|
2.000
|
1.000
|
Hsc_gene_4963.t1
|
— | — | — |
CAD5220947.1 unnamed protein product [Bursaphelenchus okinawaensis];CAG9114347.1 unnamed protein product [Bursaphelenchus okinawaensis]
|
No
|
-0.620
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+424-462_425-462+
|
SM00254+424-462+
|
PF01549+424-462+ShK_domain-like
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-420
|
1.000
|
421-462
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
53669.950
|
4.462
|
-49.500
|
60.823
|
2.381
|
74.459
|
25.541
|
25.108
|
35.714
|
33.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
138.236
|
100.860
|
34.393
|
15.549
|
20.509
|
47.176
|
7.704
|
23.468
|
29.672
|
488.907
|
292.092
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.786
|
-2.833
|
-1.032
|
— |
1.219
|
-2.602
|
-1.121
|
-1.459
|
-4.199
|
— |
-4.388
|
— | — |
No JSON data available for plots.