Hg_chrom2_TN10mRNA_3899
Organism: Heterodera glycines Gene Locus: chr2:8822467-8828001 Feature type: polypeptideProtein Sequence
Length: 576
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.07 | 0.848 | 0.568 | 0.599 | 0.579 | 0.579 | 0.641 | 1.302 | 1.003 | 1.595 | 0.368 | 2.247 | 1.688 | 1.035 | 1.24 | 1.687 | 0.911 | 1.0 | 0.935 | 0.97 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3703
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.485
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
25-49
|
0.928
|
— | — |
0.000
|
— | — |
0.117
|
0.065
|
0.012
|
0.110
|
0.187
|
0.349
|
0.221
|
0.034
|
0.869
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007127
|
1.000
|
1.000
|
Hsc_gene_4964.t1
|
Hsc_gene_4964.t1
|
— |
Q09502.2 Neuropeptide receptor 18 [Caenorhabditis elegans]
|
KAF7631046.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.914|GO:0009987_0.856|GO:0005575_0.851|GO:0110165_0.851|GO:0065007_0.828|GO:0050789_0.818|GO:0003674_0.811|GO:0050794_0.764|GO:0007154_0.731|GO:0023052_0.731|GO:0016020_0.729|GO:0050896_0.726|GO:0051716_0.713|GO:0071944_0.709|GO:0005886_0.698|GO:0007165_0.673|GO:0007186_0.609|GO:0004888_0.585|GO:0038023_0.585|GO:0060089_0.585|GO:0005488_0.582
|
IPR000276+118-142_133-405_153-174_197-219_203-219_292-315_336-360_387-413+|IPR017452+133-405+
|
— |
PF00001+133-405+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24229+109-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;498-576
|
1.000
|
6-497
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.890
|
63631.660
|
9.107
|
18.500
|
17.708
|
13.194
|
40.972
|
59.028
|
11.111
|
6.597
|
52.431
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
590.981
|
1030.897
|
1040.541
|
526.794
|
255.391
|
297.345
|
492.821
|
1242.285
|
373.422
|
473.199
|
430.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.215
|
-1.106
|
-0.874
|
-1.076
|
0.233
|
0.739
|
1.961
|
-1.193
|
— | — | — | — | — |
No JSON data available for plots.