SCN Proteipedia

Hg_chrom2_TN10mRNA_3901

Organism: Heterodera glycines Gene Locus: chr2:8833191-8841085 Feature type: polypeptide

Protein Sequence

Length: 900

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.93	1.111	0.586	0.69	1.463	1.909	0.529	1.889	0.42	0.961	1.128	0.98	1.389	1.111	1.27	1.683	1.166	0.269	0.513	0.327	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3705	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KVKK,KRVVQTSQVWFQNMRAKAK,KKRTAKGTAERQRKAQATPAKRRR	—	—	—	—	—	—	0.000	—	—	0.849	0.053	0.008	0.318	0.024	0.019	0.023	0.022	0.035	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003400	2.000	1.000	Hsc_gene_4966.t1	—	—	G5EBU4.1 Zinc finger E-box-binding homeobox protein zag-1 [Caenorhabditis elegans]	KAI1733026.1 zinc-finger double domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0008150_0.905\|GO:0005575_0.885\|GO:0009987_0.881\|GO:0005622_0.878\|GO:0110165_0.878\|GO:0065007_0.876\|GO:0050789_0.873\|GO:0050794_0.868\|GO:0043226_0.858\|GO:0043229_0.838\|GO:0008152_0.827\|GO:0019222_0.827\|GO:0031323_0.827\|GO:0044237_0.827\|GO:0044238_0.820\|GO:0080090_0.820\|GO:0006139_0.818\|GO:0009058_0.818\|GO:0009059_0.818\|GO:0016070_0.818\|GO:0032774_0.818\|GO:0034654_0.818\|GO:0043170_0.818\|GO:0044249_0.818\|GO:0090304_0.818\|GO:0141187_0.818\|GO:0060255_0.815\|GO:0009889_0.812\|GO:0010556_0.812\|GO:0031326_0.812\|GO:0019219_0.809\|GO:0010467_0.808\|GO:0010468_0.808\|GO:0051252_0.803\|GO:0006351_0.800\|GO:0006355_0.800\|GO:2001141_0.800\|GO:0016020_0.770\|GO:0005634_0.760\|GO:0043227_0.760\|GO:0043231_0.760\|GO:0006357_0.735\|GO:0006366_0.735\|GO:0003674_0.721\|GO:0005488_0.721\|GO:0003676_0.697\|GO:0097159_0.697\|GO:0003677_0.659\|GO:0043565_0.651\|GO:0003690_0.635\|GO:0032502_0.630\|GO:0048856_0.630\|GO:0048519_0.625\|GO:1990837_0.624\|GO:0048523_0.614\|GO:0032501_0.609\|GO:0043228_0.594\|GO:0043232_0.594\|GO:0007275_0.592\|GO:0048518_0.590\|GO:0048522_0.586\|GO:0000976_0.580\|GO:0001067_0.580\|GO:0140110_0.572\|GO:0048731_0.550\|GO:0009892_0.543\|GO:0003700_0.533\|GO:0031324_0.533\|GO:0010605_0.531\|GO:0009890_0.530\|GO:0009893_0.530\|GO:0010558_0.530\|GO:0031327_0.530\|GO:0045892_0.530\|GO:0045934_0.530\|GO:0051253_0.530\|GO:1902679_0.530\|GO:0030154_0.525\|GO:0048869_0.525\|GO:0010604_0.523\|GO:0000977_0.522\|GO:0031325_0.515\|GO:0009891_0.510\|GO:0031328_0.510\|GO:0045935_0.503\|GO:0051254_0.503	IPR001356+392-455_394-459_396-454+\|IPR009057+386-456+\|IPR013087+29-51_29-56_31-51_57-80_57-82_57-87_796-818_796-823_798-818_824-846_824-851_826-846_852-873_852-880+\|IPR036236+25-75_792-852_842-873+\|IPR051574+11-78+	SM00355+29-51_57-82_796-818_824-846_852-873+\|SM00389+394-459+	PF00046+396-454+Homeodomain\|PF00096+29-51_796-818_824-846+Zinc_finger,_C2H2_type\|PF12874+57-80+Zinc-finger_of_C2H2_type	G3DSA:3.30.160.60:FF:000013+54-80_849-875+Putative_zinc_finger_E-box-binding_homeobox_2\|G3DSA:3.30.160.60:FF:000082+24-53+Putative_zinc_finger_E-box-binding_homeobox_2\|G3DSA:3.30.160.60:FF:000145+823-848+Zinc_finger_protein_574\|G3DSA:3.30.160.60:FF:000744+795-822+zinc_finger_E-box-binding_homeobox_1	PTHR24391+11-78+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	235-808;873-900	2.000	1-234;809-872	8ymz_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.892	101143.130	8.888	32.000	29.444	10.556	60.556	39.444	17.444	12.000	48.889

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	1033.457	2719.058	2174.593	725.182	535.774	1305.190	683.759	1134.684	827.366	421.511	595.449

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.551	-2.044	-1.476	-0.469	1.299	-0.922	—	-0.589	—	—	—	—	—

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