Hg_chrom2_TN10mRNA_3902
Organism: Heterodera glycines Gene Locus: chr2:8833191-8841085 Feature type: polypeptideProtein Sequence
Length: 897
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 1.115 | 0.588 | 0.692 | 1.468 | 1.887 | 0.531 | 1.895 | 0.421 | 0.964 | 1.132 | 0.984 | 1.394 | 1.115 | 1.274 | 1.672 | 1.151 | 0.27 | 0.515 | 0.328 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3705
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK,KRVVQVWFQNMRAKAKRA,KKRTAKGTAERQRKAQATPAKRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.856
|
0.055
|
0.007
|
0.309
|
0.024
|
0.020
|
0.022
|
0.020
|
0.035
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003400
|
2.000
|
1.000
|
Hsc_gene_4966.t1
|
— | — |
G5EBU4.1 Zinc finger E-box-binding homeobox protein zag-1 [Caenorhabditis elegans]
|
KAI1733026.1 zinc-finger double domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.904|GO:0009987_0.859|GO:0065007_0.855|GO:0050789_0.851|GO:0050794_0.847|GO:0005575_0.816|GO:0110165_0.808|GO:0005622_0.807|GO:0043226_0.807|GO:0008152_0.803|GO:0019222_0.803|GO:0031323_0.803|GO:0044237_0.803|GO:0044238_0.799|GO:0080090_0.799|GO:0006139_0.797|GO:0009058_0.797|GO:0009059_0.797|GO:0016070_0.797|GO:0032774_0.797|GO:0034654_0.797|GO:0043170_0.797|GO:0044249_0.797|GO:0090304_0.797|GO:0141187_0.797|GO:0060255_0.793|GO:0009889_0.790|GO:0010556_0.790|GO:0031326_0.790|GO:0010467_0.788|GO:0010468_0.788|GO:0019219_0.788|GO:0043229_0.788|GO:0051252_0.784|GO:0006351_0.780|GO:0006355_0.780|GO:2001141_0.780|GO:0003674_0.739|GO:0005488_0.739|GO:0032502_0.719|GO:0048856_0.719|GO:0016020_0.717|GO:0006366_0.711|GO:0005634_0.707|GO:0043227_0.707|GO:0043231_0.707|GO:0003676_0.697|GO:0097159_0.697|GO:0006357_0.693|GO:0032501_0.680|GO:0007275_0.663|GO:0003677_0.661|GO:0043565_0.655|GO:0003690_0.640|GO:1990837_0.628|GO:0048731_0.623|GO:0048518_0.613|GO:0048522_0.607|GO:0048519_0.599|GO:0030154_0.594|GO:0048869_0.594|GO:0048523_0.588|GO:0007399_0.568|GO:0048513_0.561|GO:0043228_0.558|GO:0043232_0.558|GO:0009893_0.550|GO:0140110_0.548|GO:0010604_0.543|GO:0001067_0.540|GO:0000976_0.539|GO:0009892_0.538|GO:0031325_0.536|GO:0009891_0.534|GO:0031328_0.534|GO:0010605_0.527|GO:0031324_0.527|GO:0009890_0.526|GO:0010558_0.526|GO:0031327_0.526|GO:0045934_0.525|GO:0045935_0.525|GO:0051253_0.525|GO:0051254_0.525|GO:0045892_0.524|GO:1902679_0.524|GO:0010557_0.521|GO:0009653_0.515|GO:0003700_0.512|GO:0045893_0.506|GO:1902680_0.506|GO:0000977_0.505|GO:0022008_0.502
|
IPR001356+392-452_394-456_396-451+|IPR009057+390-455+|IPR013087+29-51_29-56_31-51_57-80_57-82_57-87_793-815_793-820_795-815_821-843_821-848_823-843_849-870_849-877+|IPR017970+427-450+|IPR036236+25-75_789-849_839-870+|IPR051574+11-78+
|
SM00355+29-51_57-82_793-815_821-843_849-870+|SM00389+394-456+
|
PF00046+396-451+Homeodomain|PF00096+29-51_793-815_821-843+Zinc_finger,_C2H2_type|PF12874+57-80+Zinc-finger_of_C2H2_type
|
G3DSA:3.30.160.60:FF:000013+54-80_846-872+Putative_zinc_finger_E-box-binding_homeobox_2|G3DSA:3.30.160.60:FF:000082+24-53+Putative_zinc_finger_E-box-binding_homeobox_2|G3DSA:3.30.160.60:FF:000145+820-845+Zinc_finger_protein_574|G3DSA:3.30.160.60:FF:000744+792-819+zinc_finger_E-box-binding_homeobox_1
|
PTHR24391+11-78+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
235-393;429-805;870-897
|
3.000
|
1-234;394-428;806-869
|
8ymz_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
100826.820
|
8.888
|
32.000
|
29.543
|
10.591
|
60.424
|
39.576
|
17.503
|
12.040
|
48.829
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1033.457
|
2719.058
|
2174.593
|
725.182
|
535.774
|
1305.190
|
683.759
|
1134.684
|
827.366
|
421.511
|
595.449
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.551
|
-2.044
|
-1.476
|
-0.469
|
1.299
|
-0.922
|
— |
-0.589
|
— | — | — | — | — |
No JSON data available for plots.