Hg_chrom2_TN10mRNA_3903
Organism: Heterodera glycines Gene Locus: chr2:8850795-8853181 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 0.716 | 0.886 | 0.884 | 0.897 | 0.526 | 0.58 | 1.282 | 1.197 | 1.663 | 0.699 | 1.659 | 1.781 | 1.134 | 1.413 | 1.722 | 0.715 | 0.66 | 1.183 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3706
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.456
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKGRAYFTKSGLLRNKRF
|
29-51
|
0.991
|
89-119
|
0.999
|
— | — |
0.000
|
— | — |
0.846
|
0.120
|
0.037
|
0.493
|
0.036
|
0.059
|
0.023
|
0.013
|
0.045
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003401
|
1.000
|
2.000
|
Hsc_gene_4969.t2;Hsc_gene_4969.t3
|
Hsc_gene_4969.t1;Hsc_gene_4969.t2;Hsc_gene_4969.t3
|
— |
Q8ITW8.1 Nuclear hormone receptor family member nhr-80 [Caenorhabditis elegans]
|
KAH7712755.1 Protein NHR-80 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0005575_0.769|GO:0110165_0.769|GO:0016020_0.719|GO:0005622_0.696|GO:0043226_0.658|GO:0043229_0.657|GO:0008150_0.651|GO:0043227_0.641|GO:0043231_0.627|GO:0009987_0.611|GO:0065007_0.589|GO:0050789_0.583|GO:0050794_0.568
|
IPR000536+133-389_166-373_178-360+|IPR001723+5-15_179-200_200-216_283-298+|IPR035500+157-387_158-388+
|
SM00430+178-360+
|
PF00104+166-373+Ligand-binding_domain_of_nuclear_hormone_receptor
|
— |
PTHR46397+3-372+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
43947.730
|
8.340
|
10.000
|
24.359
|
12.308
|
45.897
|
54.103
|
14.103
|
10.256
|
48.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
518.839
|
784.930
|
502.601
|
897.257
|
830.027
|
561.530
|
538.981
|
837.601
|
20.628
|
397.104
|
235.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.875
|
— |
0.946
|
-0.145
|
-0.550
|
— |
0.467
|
-0.493
|
-4.399
|
5.644
|
— | — | — |
No JSON data available for plots.