Hg_chrom2_TN10mRNA_3904
Organism: Heterodera glycines Gene Locus: chr2:8853962-8855030 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.062 | 0.708 | 1.186 | 0.45 | 1.449 | 0.78 | 1.139 | 2.174 | 0.483 | 1.41 | 0.856 | 1.79 | 0.725 | 1.338 | 1.065 | 0.621 | 0.998 | 0.856 | 0.334 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3707
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.814
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.452
|
0.272
|
0.013
|
0.650
|
0.245
|
0.310
|
0.256
|
0.003
|
0.347
|
0.244
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007128
|
1.000
|
1.000
|
Hsc_gene_4970.t1
|
Hsc_gene_4970.t1
|
— |
Q6P686.1 Osteoclast-stimulating factor 1 [Rattus norvegicus]
|
KAI1731499.1 ankyrin repeats (many copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.698|GO:0110165_0.681|GO:0008150_0.605|GO:0005622_0.598|GO:0003674_0.547
|
IPR002110+76-105_81-173_109-131_109-137_110-125_143-172_143-175_159-173+|IPR036028+4-72+|IPR036770+79-183_79-194+
|
SM00248+76-105_109-137_143-172+
|
PF12796+81-173+Ankyrin_repeats_(3_copies)
|
— |
PTHR24155+4-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19;164-230
|
1.000
|
20-163
|
3ehr_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
25042.230
|
5.550
|
-5.000
|
30.435
|
9.130
|
46.957
|
53.043
|
15.217
|
15.217
|
52.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
529.006
|
366.319
|
526.315
|
489.332
|
541.178
|
688.053
|
815.327
|
544.513
|
249.303
|
638.286
|
471.579
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.292
|
0.280
|
— | — |
0.361
|
0.256
|
-0.444
|
0.727
|
— | — | — | — | — |
No JSON data available for plots.