Hg_chrom2_TN10mRNA_3908
Organism: Heterodera glycines Gene Locus: chr2:8864185-8867605 Feature type: polypeptideProtein Sequence
Length: 553
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.862 | 0.799 | 0.723 | 0.811 | 1.055 | 1.02 | 0.861 | 1.356 | 1.125 | 1.54 | 0.904 | 1.276 | 1.557 | 1.182 | 1.033 | 0.827 | 0.593 | 1.37 | 0.556 | 0.585 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3711
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— |
GKILRRILREKMTKGNGRQKAKI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.126
|
0.284
|
0.056
|
0.171
|
0.137
|
0.194
|
0.050
|
0.910
|
0.154
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007132
|
1.000
|
1.000
|
Hsc_gene_4974.t1
|
Hsc_gene_4974.t1
|
— |
O24540.1 4-coumarate--CoA ligase [Vanilla planifolia]
|
KAI1727781.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.834|GO:0003674_0.831|GO:0003824_0.704|GO:0008152_0.689|GO:0005575_0.633|GO:0110165_0.628|GO:0005622_0.536|GO:0009987_0.526|GO:0005737_0.516|GO:0016874_0.509|GO:0016405_0.504|GO:0016877_0.504
|
IPR000873+32-410+|IPR020845+194-205+|IPR025110+457-532+|IPR045851+446-546+
|
— |
PF00501+32-410+AMP-binding_enzyme|PF13193+457-532+AMP-binding_enzyme_C-terminal_domain
|
G3DSA:3.30.300.30:FF:000007+448-545+4-coumarate--CoA_ligase_2
|
PTHR24096+5-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
553-553
|
1.000
|
1-552
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
61294.360
|
8.060
|
11.500
|
24.051
|
11.031
|
40.868
|
59.132
|
13.743
|
10.307
|
49.005
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
404.478
|
379.169
|
549.295
|
408.298
|
474.275
|
434.741
|
845.638
|
137.453
|
8.772
|
552.187
|
319.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.303
|
— |
-0.318
|
0.183
|
— |
0.969
|
-1.767
|
2.764
|
-6.112
|
5.746
|
— | — | — |
No JSON data available for plots.