Hg_chrom2_TN10mRNA_3909
Organism: Heterodera glycines Gene Locus: chr2:8868085-8871596 Feature type: polypeptideProtein Sequence
Length: 666
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.559 | 0.943 | 1.256 | 0.362 | 1.752 | 1.001 | 0.804 | 3.003 | 1.235 | 1.136 | 1.251 | 1.413 | 1.418 | 0.664 | 1.44 | 0.386 | 0.64 | 0.774 | 0.693 | 0.927 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3712
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_4975
|
— |
12-Not_Clustered
|
0.561
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RFSKRQK,PERKRRM,RRKRRRRKG
|
— | — | — | — |
1-24
|
0.982
|
0.879
|
0.000
|
0.000
|
0.581
|
0.109
|
0.010
|
0.416
|
0.065
|
0.104
|
0.112
|
0.017
|
0.115
|
0.595
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007133
|
1.000
|
1.000
|
Hsc_gene_4975.t1
|
Hsc_gene_4975.t1
|
— | — |
KAF7631149.1 hypothetical protein Mgra_00008590 [Meloidogyne graminicola]
|
MBO5219057
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
145-257;641-666
|
2.000
|
1-144;258-640
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
78173.460
|
6.765
|
6.000
|
38.739
|
15.165
|
53.303
|
46.697
|
21.321
|
17.417
|
38.739
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1453.604
|
52.753
|
471.118
|
508.955
|
224.531
|
78.019
|
308.000
|
65.172
|
3727.501
|
2923.188
|
3267.894
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.931
|
3.134
|
0.219
|
-1.212
|
-1.511
|
1.992
|
— |
2.382
|
— |
-2.688
|
-3.558
|
— | — |