Hg_chrom2_TN10mRNA_3911
Organism: Heterodera glycines Gene Locus: chr2:8874304-8877904 Feature type: polypeptideProtein Sequence
Length: 836
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 1.113 | 0.87 | 0.536 | 1.415 | 1.043 | 0.669 | 1.316 | 0.744 | 1.18 | 0.689 | 1.478 | 1.728 | 0.943 | 1.709 | 1.265 | 0.843 | 0.888 | 0.92 | 0.493 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3714
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.280
|
0.252
|
0.042
|
0.660
|
0.103
|
0.498
|
0.288
|
0.076
|
0.265
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007135
|
1.000
|
1.000
|
Hsc_gene_4977.t1
|
Hsc_gene_4977.t1
|
— |
Q10003.1 Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2 [Caenorhabditis elegans]
|
KAI1704587.1 glycerophosphoryl diester phosphodiesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0008081|GO:0030246|GO:2001070
|
GO:0008150_0.853|GO:0005575_0.767|GO:0110165_0.765|GO:0005622_0.700|GO:0003674_0.698|GO:0005737_0.616|GO:0009987_0.584|GO:0003824_0.560|GO:0016787_0.518
|
IPR002044+33-178_38-167+|IPR013783+35-184+|IPR013784+37-159+|IPR017946+414-765_427-759+|IPR030395+427-764_432-758+|IPR051578+54-770+
|
SM01065+38-167+
|
PF03009+432-758+Glycerophosphoryl_diester_phosphodiesterase_family
|
— |
PTHR22958+54-770+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-836
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.735
|
95147.370
|
7.173
|
8.000
|
28.828
|
11.722
|
51.675
|
48.325
|
15.550
|
13.278
|
48.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkorange
|
814.795
|
473.844
|
1806.938
|
680.606
|
267.114
|
175.953
|
160.859
|
919.323
|
340.666
|
1627.492
|
1075.995
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.703
|
0.385
|
-1.301
|
-1.380
|
-0.588
|
— |
2.282
|
-2.374
|
— | — | — | — | — |
No JSON data available for plots.