SCN Proteipedia

Hg_chrom2_TN10mRNA_3912

Organism: Heterodera glycines Gene Locus: chr2:8878535-8883585 Feature type: polypeptide

Protein Sequence

Length: 596

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.112	0.663	0.854	0.405	1.119	1.291	0.659	1.258	1.305	1.542	1.322	1.382	0.652	0.807	1.609	0.983	0.853	0.788	0.774	0.247	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3715	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.976

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRK,KKEAQQMATDPKQKVRRI,KKLALPNTALLHGRMKEK,RRGKKEAQQMATDPKQKVR,RRSDTDEGPTKEELMRRRK,ELMRRRKRAVEKALKGKLKGNQQNGEQRERRINQSAEGRKVKIGKRKVRLEKGLKKWVKRAKMDSGR	—	—	5-40	0.903	—	—	0.000	—	—	0.857	0.170	0.016	0.206	0.052	0.020	0.039	0.003	0.058	0.059

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001862	3.000	1.000	Hsc_gene_4978.t1	Hsc_gene_4978.t1	—	A2XVF7.2 DEAD-box ATP-dependent RNA helicase 13 [Oryza sativa Indica Group]	KAI1727066.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]	No	-0.150

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003724\|GO:0005524	GO:0005575_0.882\|GO:0110165_0.882\|GO:0005622_0.835\|GO:0043226_0.771\|GO:0016020_0.759\|GO:0043229_0.758\|GO:0008150_0.736\|GO:0043227_0.672\|GO:0009987_0.670\|GO:0043231_0.653\|GO:0003674_0.603\|GO:0005634_0.547\|GO:0008152_0.546\|GO:0044238_0.544\|GO:0043170_0.538\|GO:0009058_0.531\|GO:0006139_0.523\|GO:0044237_0.521\|GO:0044249_0.518\|GO:0043228_0.517\|GO:0043232_0.517\|GO:0009059_0.508	IPR001650+315-465_317-423_342-424+\|IPR011545+43-247+\|IPR014001+38-273_51-264+\|IPR014014+19-47+\|IPR027417+2-261_50-435_300-534+\|IPR050079+12-581+	SM00487+38-273+\|SM00490+342-424+	PF00270+43-247+DEAD/DEAH_box_helicase\|PF00271+317-423+Helicase_conserved_C-terminal_domain	—	PTHR47959+12-581+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5;501-596	1.000	6-500	3i32_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.655	66599.200	10.554	38.500	30.537	6.711	50.503	49.497	19.128	11.409	45.302

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	2279.851	3263.984	3518.116	2238.830	1999.815	1639.644	1970.865	1936.747	1960.409	2291.039	2149.340

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.122	-0.681	-0.543	-0.195	-0.272	0.277	—	—	—	—	—	—	—

No JSON data available for plots.

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