Hg_chrom2_TN10mRNA_3913
Organism: Heterodera glycines Gene Locus: chr2:8892193-8893895 Feature type: polypeptideProtein Sequence
Length: 379
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.951 | 0.92 | 1.103 | 0.182 | 1.363 | 1.218 | 1.131 | 1.583 | 0.821 | 1.07 | 0.88 | 2.173 | 1.173 | 1.066 | 1.292 | 0.678 | 0.952 | 0.68 | 1.015 | 0.621 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3716
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_4979
|
— |
9-Migratory
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
nucleus
|
KKALKQMFISWLNNRRRR.
|
— | — | — | — |
1-25
|
0.995
|
1.000
|
0.000
|
0.000
|
0.461
|
0.490
|
0.077
|
0.292
|
0.300
|
0.086
|
0.182
|
0.058
|
0.191
|
0.776
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007136
|
1.000
|
1.000
|
Hsc_gene_4979.t1
|
Hsc_gene_4979.t1
|
— |
G5EBU3.1 Matrix metalloproteinase-C [Caenorhabditis elegans]
|
KAH7730339.1 matrixin family protein [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.779|GO:0005575_0.685|GO:0110165_0.680|GO:0003674_0.658|GO:0009987_0.642|GO:0008152_0.504
|
IPR001818+123-288+|IPR002477+45-100+|IPR006026+120-289+|IPR021190+100-113_149-164_173-201_235-260_275-288+|IPR024079+32-292+|IPR033739+123-288+|IPR036365+44-109+
|
SM00235+120-289+
|
PF00413+123-288+Matrixin|PF01471+45-100+Putative_peptidoglycan_binding_domain
|
— |
PTHR10201+12-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
273-379
|
1.000
|
1-272
|
1su3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
42286.590
|
6.241
|
-2.000
|
29.551
|
10.818
|
48.813
|
51.187
|
15.303
|
14.248
|
48.813
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
2599.393
|
1009.541
|
7735.620
|
1828.290
|
2869.276
|
2131.503
|
897.427
|
11511.425
|
798.186
|
280.048
|
502.107
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.709
|
0.719
|
-1.973
|
0.618
|
-0.413
|
-1.238
|
2.332
|
-3.539
|
— | — |
3.575
|
— | — |