Hg_chrom2_TN10mRNA_3920
Organism: Heterodera glycines Gene Locus: chr2:8899883-8901649 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.686 | 0.61 | 1.073 | 0.452 | 1.366 | 1.009 | 1.054 | 1.967 | 1.166 | 0.975 | 0.646 | 1.157 | 2.368 | 1.072 | 1.338 | 1.171 | 0.43 | 0.845 | 1.513 | 0.482 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3722
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KKRAGKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.530
|
0.290
|
0.006
|
0.524
|
0.276
|
0.161
|
0.137
|
0.009
|
0.109
|
0.499
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007140
|
1.000
|
1.000
|
Hsc_gene_4984.t1
|
— | — |
P36573.1 32 kDa beta-galactoside-binding lectin [Caenorhabditis elegans]
|
KAF7639365.1 Galectin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0005575_0.751|GO:0110165_0.747|GO:0008150_0.556|GO:0016020_0.504
|
IPR001079+8-143_9-141_9-142_11-143_16-142_149-277_150-274_152-277_156-276_160-255+|IPR013320+5-151_149-274+|IPR044156+7-111+
|
SM00276+8-143_149-277+|SM00908+16-142_156-276+
|
PF00337+9-142_150-274+Galactoside-binding_lectin
|
— |
PTHR11346+7-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
281-305
|
1.000
|
1-280
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
34604.980
|
5.922
|
-4.000
|
28.852
|
16.066
|
46.230
|
53.770
|
14.754
|
14.098
|
46.557
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
5067.717
|
49159.033
|
6620.029
|
508.691
|
149.867
|
89.609
|
240.358
|
920.771
|
587.282
|
97.666
|
307.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.124
|
-6.731
|
-3.592
|
-1.794
|
-0.728
|
1.435
|
3.256
|
-1.793
|
— | — | — | — | — |
No JSON data available for plots.