Hg_chrom2_TN10mRNA_3923
Organism: Heterodera glycines Gene Locus: chr2:8914668-8915473 Feature type: polypeptideProtein Sequence
Length: 91
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.15 | 0.511 | 0.999 | 0.0 | 1.099 | 0.564 | 0.916 | 0.0 | 1.221 | 0.891 | 1.166 | 1.293 | 1.832 | 1.479 | 0.897 | 1.099 | 1.261 | 1.332 | 0.0 | 0.323 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3725
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.581
|
0.141
|
0.047
|
0.513
|
0.321
|
0.153
|
0.111
|
0.004
|
0.218
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007143
|
1.000
|
1.000
|
Hsc_gene_4987.t1
|
Hsc_gene_4987.t1
|
— |
Q9CA23.1 Ubiquitin-fold modifier 1 [Arabidopsis thaliana]
|
KAI1729566.1 ubiquitin fold modifier 1 protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0071569
|
GO:0005575_0.814|GO:0110165_0.795|GO:0008150_0.758|GO:0005622_0.710|GO:0005737_0.658|GO:0009987_0.553
|
IPR005375+1-90_4-89_8-82+|IPR029071+4-88+
|
— |
PF03671+8-82+Ubiquitin_fold_modifier_1_protein
|
G3DSA:3.10.20.90:FF:000044+5-90+Ubiquitin-fold_modifier_1
|
PTHR15825+4-89+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-91
|
1.000
|
1-87
|
1l7y_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
9757.200
|
6.299
|
0.000
|
24.176
|
7.692
|
43.956
|
56.044
|
12.088
|
12.088
|
57.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
saddlebrown
|
1265.465
|
345.619
|
869.468
|
875.499
|
870.717
|
851.803
|
1047.792
|
878.388
|
870.203
|
2731.526
|
1933.816
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.101
|
1.204
|
0.119
|
— | — |
0.309
|
— |
0.397
|
— | — | — | — | — |
No JSON data available for plots.