Hg_chrom2_TN10mRNA_3924
Organism: Heterodera glycines Gene Locus: chr2:8916020-8918178 Feature type: polypeptideProtein Sequence
Length: 437
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.064 | 1.011 | 0.749 | 0.71 | 1.144 | 0.88 | 1.008 | 1.602 | 1.068 | 1.484 | 0.797 | 1.346 | 1.335 | 1.1 | 0.981 | 0.588 | 0.713 | 1.214 | 0.704 | 0.673 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3726
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.693
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
22-42
|
0.998
|
36-56
|
0.999
|
— | — |
0.000
|
— | — |
0.103
|
0.845
|
0.108
|
0.201
|
0.040
|
0.158
|
0.149
|
0.082
|
0.120
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007144
|
1.000
|
1.000
|
Hsc_gene_4988.t1
|
Hsc_gene_4988.t1
|
— |
P41689.1 Alanine--glyoxylate aminotransferase [Felis catus]
|
AAK26375.1 class V aminotransferase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.826|GO:0008150_0.793|GO:0003824_0.757|GO:0009987_0.723|GO:0008152_0.669|GO:0016740_0.650|GO:0044237_0.634|GO:0044281_0.608|GO:0008483_0.587|GO:0016769_0.587|GO:0006082_0.569|GO:0019752_0.569|GO:0043436_0.569|GO:0005575_0.549|GO:0110165_0.548
|
IPR000192+84-412+|IPR015421+72-320+|IPR015422+59-418+|IPR015424+46-421+|IPR020578+238-258+|IPR024169+55-437+
|
— |
PF00266+84-412+Aminotransferase_class-V
|
G3DSA:3.40.640.10:FF:000027+72-320+Serine--pyruvate_aminotransferase,_mitochondrial
|
PTHR21152+52-423+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
437-437
|
1.000
|
1-436
|
4cbs_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
48056.460
|
6.851
|
3.000
|
24.256
|
11.213
|
40.503
|
59.497
|
13.272
|
10.984
|
50.343
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
14608.952
|
29565.913
|
11340.308
|
9466.781
|
14725.984
|
22796.881
|
17062.573
|
14947.322
|
13846.310
|
8564.771
|
10828.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.612
|
-1.780
|
-0.152
|
0.606
|
0.645
|
-0.407
|
-0.714
|
0.334
|
— | — | — | — | — |
No JSON data available for plots.