SCN Proteipedia

Hg_chrom2_TN10mRNA_3931

Organism: Heterodera glycines Gene Locus: chr2:8929400-8931583 Feature type: polypeptide

Protein Sequence

Length: 525

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.709	0.93	1.212	0.985	1.429	1.172	0.567	1.429	0.804	1.133	0.924	1.793	0.635	0.952	1.166	1.687	1.249	0.693	0.293	0.336	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3732	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.641

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKQRVHGSYDYEKKKRRPP,RKVDKEEEERESHKERAKR	—	—	—	—	—	—	0.000	—	—	0.897	0.108	0.007	0.315	0.049	0.093	0.155	0.013	0.040	0.012

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007147	1.000	1.000	Hsc_gene_4992.t1	Hsc_gene_4992.t1	—	Q66J69.1 E3 ubiquitin-protein ligase RING2-A [Xenopus laevis]	KAF7637151.1 RING-type domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000151	GO:0008150_0.961\|GO:0065007_0.853\|GO:0005575_0.841\|GO:0009987_0.840\|GO:0050789_0.840\|GO:0110165_0.834\|GO:0050794_0.829\|GO:0005622_0.786\|GO:0016020_0.694\|GO:0071840_0.690\|GO:0016043_0.689\|GO:0043226_0.686\|GO:0032501_0.681\|GO:0032502_0.679\|GO:0048856_0.679\|GO:0008152_0.659\|GO:0019222_0.659\|GO:0031323_0.658\|GO:0043170_0.658\|GO:0044237_0.658\|GO:0043229_0.657\|GO:0060255_0.643\|GO:0009058_0.640\|GO:0009059_0.640\|GO:0010467_0.640\|GO:0044249_0.640\|GO:0048519_0.632\|GO:0009889_0.629\|GO:0010468_0.629\|GO:0010556_0.629\|GO:0031326_0.629\|GO:0043227_0.616\|GO:0048523_0.615\|GO:0044238_0.605\|GO:0080090_0.605\|GO:0043231_0.602\|GO:0006139_0.584\|GO:0005634_0.583\|GO:0034654_0.583\|GO:0090304_0.583\|GO:0141187_0.583\|GO:0016070_0.580\|GO:0032774_0.574\|GO:0007275_0.570\|GO:0019219_0.562\|GO:0051252_0.558\|GO:2001141_0.556\|GO:0006351_0.555\|GO:0006355_0.549\|GO:0003674_0.538\|GO:0032991_0.505	IPR001841+54-93_54-94+\|IPR013083+15-121+\|IPR017907+70-79+\|IPR043540+18-219+	SM00184+54-93+	PF13923+54-93+Zinc_finger,_C3HC4_type_(RING_finger)	—	PTHR46076+18-219+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25;157-341;378-525	2.000	26-156;342-377	8pp7_N	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.580	58112.840	5.311	-10.500	29.905	6.667	57.905	42.095	14.667	15.238	53.333

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	tan	809.705	1231.832	962.924	897.261	1100.635	1093.268	1495.527	819.582	659.156	197.707	395.471

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.585	-0.594	—	0.264	—	0.464	-0.519	1.010	—	—	2.670	—	—

No JSON data available for plots.

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