Hg_chrom2_TN10mRNA_3932
Organism: Heterodera glycines Gene Locus: chr2:8932655-8936333 Feature type: polypeptideProtein Sequence
Length: 1,004
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 1.413 | 1.068 | 0.824 | 1.959 | 1.558 | 0.877 | 1.693 | 0.775 | 0.781 | 0.845 | 2.637 | 0.913 | 0.67 | 1.585 | 0.925 | 0.571 | 0.619 | 0.23 | 0.615 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3733
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRAR,RKRRRP,RRIVRNRPGPMTSKKRVL,RRFFGSRGRKPMSRKARD,KEPVRKRRSGGRRFFGSRGRKPMSRKAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.961
|
0.025
|
0.045
|
0.164
|
0.060
|
0.009
|
0.011
|
0.045
|
0.071
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001863
|
1.000
|
3.000
|
Hsc_gene_4993.t1;Hsc_gene_4993.t2;Hsc_gene_4993.t3
|
Hsc_gene_4993.t1;Hsc_gene_4993.t2;Hsc_gene_4993.t3
|
— | — |
KAI1713375.1 Zinc finger, C2H2 type family protein [Ditylenchus destructor]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+107-130_107-135_136-158_411-432_442-467_598-621_779-799_806-829_806-834+|IPR036236+106-158+|IPR050688+107-830+
|
SM00355+107-130_136-158_411-432_442-467_598-621_779-799_806-829+
|
— | — |
PTHR24403+107-830+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56;184-400;667-763;855-1004
|
3.000
|
57-183;401-666;764-854
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
114305.820
|
5.232
|
-26.000
|
34.363
|
9.064
|
56.474
|
43.526
|
16.733
|
17.629
|
46.016
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
2104.023
|
4781.011
|
1638.888
|
1841.162
|
1864.164
|
2663.747
|
2922.880
|
1683.237
|
2026.942
|
1161.737
|
1532.539
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.774
|
-1.514
|
0.277
|
— |
0.529
|
0.145
|
-0.762
|
0.937
|
— | — | — | — | — |
No JSON data available for plots.