Hg_chrom2_TN10mRNA_3933
Organism: Heterodera glycines Gene Locus: chr2:8936351-8937883 Feature type: polypeptideProtein Sequence
Length: 403
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.241 | 1.096 | 0.902 | 0.599 | 0.993 | 1.273 | 0.916 | 0.496 | 1.103 | 1.341 | 0.677 | 1.752 | 1.585 | 1.002 | 1.013 | 1.099 | 0.773 | 0.677 | 0.764 | 0.657 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3734
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-28
|
0.977
|
0.999
|
0.000
|
0.000
|
0.115
|
0.151
|
0.022
|
0.130
|
0.144
|
0.147
|
0.326
|
0.110
|
0.799
|
0.350
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007148
|
1.000
|
1.000
|
Hsc_gene_4994.t1
|
Hsc_gene_4994.t1
|
— | — |
KAH7704457.1 Protein F23H11.7 [Aphelenchus avenae]
|
BAP54918
|
0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
307-403
|
1.000
|
1-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
44082.190
|
5.293
|
-4.000
|
21.340
|
9.926
|
43.424
|
56.576
|
10.422
|
10.918
|
51.861
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
984.696
|
277.389
|
246.954
|
107.884
|
92.544
|
176.670
|
265.255
|
269.553
|
599.995
|
3319.453
|
2153.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.398
|
-1.499
|
-1.085
|
— |
0.947
|
0.597
|
0.504
|
— |
-2.588
|
— |
-4.863
|
— | — |