SCN Proteipedia

Hg_chrom2_TN10mRNA_3934

Organism: Heterodera glycines Gene Locus: chr2:8944521-8948015 Feature type: polypeptide

Protein Sequence

Length: 631

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.663	0.811	0.922	0.546	1.347	1.057	0.811	1.426	1.092	1.499	0.912	1.119	0.836	1.158	1.585	1.019	1.065	0.672	0.61	0.792	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3735	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.957

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRRP,RKSK,RRKR,KRRK	—	—	—	—	—	—	0.000	—	—	0.397	0.192	0.026	0.579	0.126	0.145	0.188	0.060	0.566	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003404	1.000	2.000	Hsc_gene_3202.t1;Hsc_gene_4998.t1	Hsc_gene_3202.t1;Hsc_gene_4997.t1;Hsc_gene_4998.t1	—	Q8I7M8.1 Cyclin-dependent kinase 17 [Caenorhabditis elegans]	KAI6175657.1 Protein kinase domain-containing protein [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0003674_0.822\|GO:0003824_0.822\|GO:0140096_0.822\|GO:0004672_0.813\|GO:0016301_0.813\|GO:0016740_0.813\|GO:0016772_0.813\|GO:0016773_0.813\|GO:0005575_0.812\|GO:0008150_0.802\|GO:0110165_0.792\|GO:0009987_0.774\|GO:0065007_0.728\|GO:0050789_0.722\|GO:0050794_0.713\|GO:0005622_0.683\|GO:0004674_0.653\|GO:0016020_0.632\|GO:0050896_0.630\|GO:0051716_0.605\|GO:0023052_0.581\|GO:0007154_0.579\|GO:0005737_0.546\|GO:0071944_0.537\|GO:0005886_0.523\|GO:0071840_0.519\|GO:0016043_0.518	IPR000719+295-575_296-574+\|IPR008271+412-424+\|IPR011009+289-577+\|IPR017441+301-324+\|IPR050108+295-574+	SM00220+295-575+	PF00069+296-574+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000624+373-590+Mitogen-activated_protein_kinase\|G3DSA:3.30.200.20:FF:000124+292-374+Cyclin-dependent_kinase_4	PTHR24056+295-574+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-282;598-631	1.000	283-597	5g6v_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.770	71198.020	8.182	13.000	29.794	9.350	51.030	48.970	16.640	13.154	46.751

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1338.954	3361.048	2430.998	1063.415	431.390	713.220	589.597	2483.822	1246.704	770.338	974.495

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.696	-1.797	-1.085	-1.334	0.740	-0.264	1.701	-1.933	—	—	—	—	—

No JSON data available for plots.

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