Hg_chrom2_TN10mRNA_3936
Organism: Heterodera glycines Gene Locus: chr2:8952879-8954930 Feature type: polypeptideProtein Sequence
Length: 315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.107 | 0.808 | 0.219 | 1.164 | 0.651 | 0.68 | 0.635 | 1.199 | 0.987 | 0.673 | 1.12 | 1.499 | 0.488 | 1.62 | 1.224 | 1.301 | 1.251 | 1.709 | 1.307 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3737
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.933
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRSDSVSRRSRSRSRKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.219
|
0.326
|
0.010
|
0.205
|
0.478
|
0.185
|
0.204
|
0.065
|
0.157
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007150
|
1.000
|
1.000
|
Hsc_gene_5000.t1
|
Hsc_gene_5000.t1
|
— |
Q8BGH4.1 Receptor expression-enhancing protein 1 [Mus musculus]
|
KAI1729023.1 TB2/DP1, HVA22 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.832|GO:0005575_0.758|GO:0110165_0.758|GO:0009987_0.718|GO:0016020_0.710|GO:0071944_0.676|GO:0005886_0.664|GO:0005622_0.607|GO:0043226_0.594|GO:0005737_0.588|GO:0043229_0.572|GO:0043227_0.570|GO:0043231_0.549
|
IPR004345+16-121_20-97+
|
— |
PF03134+20-97+TB2/DP1,_HVA22_family
|
— |
PTHR12300+16-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
159-315
|
1.000
|
1-158
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
35958.720
|
8.774
|
5.000
|
25.079
|
13.333
|
48.889
|
51.111
|
13.651
|
11.429
|
50.159
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1185.636
|
2063.942
|
2283.677
|
1250.736
|
1129.570
|
1303.140
|
1415.232
|
1387.698
|
901.846
|
448.023
|
642.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.860
|
-0.760
|
-0.179
|
0.221
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.