Hg_chrom2_TN10mRNA_3940
Organism: Heterodera glycines Gene Locus: chr2:8958203-8958820 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.415 | 0.332 | 0.13 | 2.956 | 0.238 | 0.366 | 0.51 | 1.429 | 1.429 | 1.931 | 0.0 | 1.681 | 2.183 | 1.511 | 0.875 | 2.449 | 0.82 | 0.541 | 0.549 | 1.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3741
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
lysosome_vacuole
|
— | — |
13-39
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.169
|
0.019
|
0.014
|
0.220
|
0.259
|
0.616
|
0.237
|
0.004
|
0.337
|
0.400
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007152
|
1.000
|
1.000
|
Hsc_gene_5002.t1
|
Hsc_gene_5002.t1
|
— | — |
XP_024507511.1 Protein of unknown function DUF2650 family-containing protein [Strongyloides ratti];CEF68311.1 Protein of unknown function DUF2650 family-containing protein [Strongyloides ratti]
|
No
|
-0.430
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.929|GO:0110165_0.929|GO:0071944_0.891|GO:0005886_0.889|GO:0016020_0.889|GO:0030054_0.592|GO:0098590_0.579|GO:0045202_0.578|GO:0042995_0.560|GO:0120025_0.559|GO:0043005_0.555|GO:0044297_0.554|GO:0036477_0.553|GO:0043025_0.550|GO:0032809_0.540|GO:0044298_0.540
|
IPR022559+67-139_85-120+
|
— |
PF10853+85-120+Protein_of_unknown_function_(DUF2650)
|
— |
PTHR34149+67-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.957
|
15575.380
|
7.896
|
5.000
|
9.286
|
17.143
|
34.286
|
65.714
|
7.143
|
2.143
|
52.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
146.954
|
32.901
|
156.663
|
107.447
|
106.756
|
233.280
|
165.511
|
361.016
|
47.173
|
171.203
|
118.047
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.020
|
1.569
|
-0.435
|
— |
1.141
|
-0.482
|
0.524
|
-0.980
|
— | — | — | — | — |
No JSON data available for plots.