SCN Proteipedia

Hg_chrom2_TN10mRNA_3942

Organism: Heterodera glycines Gene Locus: chr2:8968996-8972844 Feature type: polypeptide

Protein Sequence

Length: 721

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.935	1.129	0.958	0.287	1.503	1.316	0.776	0.832	0.894	1.275	0.82	0.979	1.079	1.334	1.302	1.308	0.705	0.904	0.533	0.245	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3743	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.275	0.128	0.011	0.662	0.225	0.524	0.452	0.015	0.354	0.119

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007154	1.000	1.000	Hsc_gene_5004.t1	Hsc_gene_5004.t1	—	Q60902.3 Epidermal growth factor receptor substrate 15-like 1 [Mus musculus]	KAH7726348.1 EF hand family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005515	GO:0008150_0.926\|GO:0005575_0.915\|GO:0110165_0.915\|GO:0009987_0.883\|GO:0005622_0.838\|GO:0016020_0.742\|GO:0005737_0.710\|GO:0043226_0.706\|GO:0043229_0.683\|GO:0051179_0.678\|GO:0071840_0.671\|GO:0016043_0.666\|GO:0071944_0.651\|GO:0051234_0.630\|GO:0006810_0.624\|GO:0005886_0.613\|GO:0043227_0.610\|GO:0003674_0.566\|GO:0005488_0.550\|GO:0043231_0.550\|GO:0065007_0.532\|GO:0051641_0.524\|GO:0050789_0.519\|GO:0016192_0.518\|GO:0006996_0.507\|GO:0050794_0.504	IPR000261+145-239_151-243_152-240_156-221_318-410_323-388_323-391_327-393+\|IPR002048+184-219_188-216_322-357_326-354_360-388+\|IPR011992+145-237_180-387+\|IPR018247+197-209_335-347+	SM00027+145-239_318-410+\|SM00054+188-216_326-354_360-388+	PF12763+151-243_323-391+Cytoskeletal-regulatory_complex_EF_hand	—	PTHR11216+324-420+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	231-308;400-721	2.000	1-230;309-399	1eh2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.711	79352.100	5.202	-12.000	27.739	7.074	51.179	48.821	13.454	14.286	51.872

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	2258.550	4917.167	2951.391	2360.122	1973.561	1872.804	3177.986	2834.469	1972.016	869.330	1341.910

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.966	-1.196	-0.213	-0.290	—	0.774	0.493	0.308	—	—	—	—	—

No JSON data available for plots.

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