SCN Proteipedia

Hg_chrom2_TN10mRNA_3943

Organism: Heterodera glycines Gene Locus: chr2:8973312-8977544 Feature type: polypeptide

Protein Sequence

Length: 589

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.869	1.224	0.617	0.644	0.962	0.784	0.526	0.594	1.132	1.308	0.772	1.598	1.886	1.175	1.282	1.431	0.807	0.875	1.828	0.799	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3744	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RKRR,ERKKAREEKAKRTKAKV,RKAYLERKKAREEKAKRTK	3-23	0.968	9-56	0.964	—	—	0.016	—	—	0.063	0.093	0.050	0.133	0.182	0.222	0.325	0.020	0.730	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007155	1.000	1.000	Hsc_gene_5005.t1	Hsc_gene_5005.t1	—	Q9GQ00.1 Serotonin-gated chloride channel mod-1 [Caenorhabditis elegans]	KAI1723031.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.967\|GO:0009987_0.934\|GO:0005575_0.911\|GO:0110165_0.910\|GO:0016020_0.873\|GO:0006810_0.830\|GO:0051179_0.830\|GO:0051234_0.830\|GO:0071944_0.824\|GO:0005886_0.813\|GO:0065007_0.807\|GO:0050789_0.776\|GO:0003674_0.768\|GO:0055085_0.748\|GO:0006811_0.732\|GO:0007154_0.718\|GO:0023052_0.710\|GO:0034220_0.700\|GO:0050794_0.657\|GO:0050896_0.656\|GO:0005215_0.646\|GO:0022857_0.646\|GO:0051716_0.635\|GO:0005216_0.617\|GO:0015075_0.617\|GO:0015267_0.617\|GO:0022803_0.617\|GO:0032501_0.612\|GO:0007267_0.599\|GO:0030054_0.581\|GO:0022836_0.579\|GO:0007165_0.559\|GO:0045202_0.559\|GO:0007268_0.549\|GO:0098916_0.549\|GO:0099536_0.549\|GO:0099537_0.549\|GO:0015276_0.546\|GO:0022834_0.546\|GO:0098660_0.539\|GO:0005230_0.522\|GO:0015698_0.518\|GO:0043226_0.518\|GO:0006820_0.517\|GO:0006821_0.514	IPR006028+359-379_385-406_419-440_557-577+\|IPR006029+365-574+\|IPR006201+153-489_192-208_227-238_273-287_350-362+\|IPR006202+148-354+\|IPR018000+273-287+\|IPR036719+356-581+\|IPR036734+145-354_146-352+\|IPR038050+353-589+	—	PF02931+148-354+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+365-574+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:2.70.170.10:FF:000034+143-353+Ligand-Gated_ion_Channel	PTHR18945+153-489+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	487-538	2.000	1-486;539-589	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.893	66867.960	9.236	16.500	21.732	13.073	44.992	55.008	12.564	9.168	49.236

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	324.104	849.618	790.121	362.071	136.690	87.865	181.913	401.176	132.587	264.968	208.233

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.335	-1.368	-1.017	-1.436	-0.623	1.061	2.095	-1.001	—	—	—	—	—

No JSON data available for plots.

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