Hg_chrom2_TN10mRNA_3944
Organism: Heterodera glycines Gene Locus: chr2:8977614-8980042 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 1.067 | 1.126 | 0.475 | 1.109 | 1.0 | 0.573 | 1.835 | 1.07 | 1.426 | 1.112 | 1.214 | 1.465 | 0.794 | 1.404 | 1.409 | 0.714 | 0.521 | 1.235 | 0.27 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3745
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRILEDFRNFLSLRNRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.935
|
0.029
|
0.017
|
0.230
|
0.020
|
0.031
|
0.012
|
0.001
|
0.035
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007156
|
1.000
|
1.000
|
Hsc_gene_5006.t1
|
Hsc_gene_5006.t1
|
— |
Q91628.1 Origin recognition complex subunit 2 [Xenopus laevis]
|
KAI1727856.1 origin recognition complex subunit 2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000808|GO:0005634|GO:0006260
|
GO:0005575_0.831|GO:0110165_0.831|GO:0005622_0.788|GO:0016020_0.753|GO:0043226_0.746|GO:0043229_0.746|GO:0043227_0.693|GO:0043231_0.686|GO:0008150_0.607|GO:0003674_0.602|GO:0005634_0.595|GO:0009987_0.562|GO:0005488_0.553|GO:0043228_0.526|GO:0043232_0.518
|
IPR007220+59-431_149-414+
|
— |
PF04084+149-414+Origin_recognition_complex_subunit_2
|
— |
PTHR14052+59-431+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-112
|
1.000
|
113-436
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
49478.150
|
8.937
|
14.000
|
30.734
|
11.468
|
53.440
|
46.560
|
17.890
|
12.844
|
46.330
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1111.209
|
1116.503
|
1164.884
|
1251.321
|
1335.005
|
1080.565
|
1430.941
|
1103.031
|
619.556
|
1216.029
|
960.398
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.169
|
— |
0.212
|
— |
-0.291
|
0.415
|
— |
0.518
|
— | — | — | — | — |
No JSON data available for plots.