Hg_chrom2_TN10mRNA_3945
Organism: Heterodera glycines Gene Locus: chr2:8981220-8983384 Feature type: polypeptideProtein Sequence
Length: 529
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.879 | 0.879 | 0.481 | 0.782 | 0.914 | 0.872 | 0.855 | 0.473 | 2.268 | 1.686 | 0.716 | 1.446 | 1.785 | 0.8 | 0.694 | 0.972 | 0.93 | 1.06 | 0.727 | 0.723 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3746
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
PLEKRIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.041
|
0.064
|
0.030
|
0.158
|
0.302
|
0.606
|
0.292
|
0.004
|
0.608
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000789
|
3.000
|
3.000
|
Hsc_gene_4950.t1;Hsc_gene_4955.t1;Hsc_gene_5007.t1
|
Hsc_gene_5007.t1
|
— |
Q4KL91.1 Neutral amino acid uniporter 4 [Xenopus laevis]
|
KAF7637094.1 Aa_trans domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.872|GO:0005575_0.831|GO:0110165_0.831|GO:0009987_0.824|GO:0051179_0.804|GO:0006810_0.797|GO:0051234_0.797|GO:0016020_0.763|GO:0003674_0.746|GO:0055085_0.743|GO:0005215_0.688|GO:0022857_0.688|GO:0071944_0.607|GO:0005886_0.602|GO:0003333_0.585|GO:0006865_0.585|GO:0043226_0.572|GO:0015171_0.558|GO:0005622_0.551|GO:0005737_0.551|GO:0043227_0.544
|
IPR013057+82-487+
|
— |
PF01490+82-487+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+82-490+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-65
|
1.000
|
66-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
58225.690
|
7.181
|
2.500
|
17.202
|
10.775
|
36.862
|
63.138
|
9.074
|
8.129
|
47.070
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
212.336
|
34.466
|
96.469
|
97.205
|
201.857
|
411.916
|
270.716
|
314.020
|
1.382
|
392.939
|
225.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.250
|
1.359
|
— |
1.024
|
1.043
|
-0.596
|
— | — |
-8.369
|
6.469
|
— | — | — |
No JSON data available for plots.