Hg_chrom2_TN10mRNA_3946
Organism: Heterodera glycines Gene Locus: chr2:8985315-8986807 Feature type: polypeptideProtein Sequence
Length: 146
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.478 | 1.593 | 0.498 | 1.653 | 0.571 | 0.878 | 0.326 | 1.712 | 1.522 | 0.833 | 0.83 | 2.417 | 1.332 | 2.371 | 1.258 | 2.348 | 0.225 | 0.623 | 0.0 | 0.201 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3747
|
— | — |
1.556
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
66-86
|
1.000
|
— | — |
0.000
|
— | — |
0.352
|
0.172
|
0.019
|
0.667
|
0.050
|
0.226
|
0.140
|
0.116
|
0.121
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007121
|
2.000
|
0.000
|
0.000
|
Hsc_gene_4949.t2;Hsc_gene_4949.t3;Hsc_gene_4949.t4
|
— |
G5EC36.1 LIM/homeobox protein lim-7 [Caenorhabditis elegans]
|
KAK6049725.1 LIM domain protein [Cooperia oncophora]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.933|GO:0005575_0.806|GO:0110165_0.801|GO:0009987_0.798|GO:0005622_0.758|GO:0032501_0.717|GO:0043226_0.710|GO:0043229_0.710|GO:0032502_0.706|GO:0048856_0.705|GO:0065007_0.686|GO:0050789_0.678|GO:0007275_0.673|GO:0048731_0.657|GO:0016020_0.654|GO:0043227_0.638|GO:0043231_0.615|GO:0050794_0.591|GO:0030154_0.582|GO:0048869_0.582|GO:0005634_0.524
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53
|
1.000
|
54-146
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
16164.660
|
9.523
|
10.500
|
21.233
|
8.904
|
49.315
|
50.685
|
15.068
|
6.164
|
55.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
7.648
|
13.225
|
10.081
|
4.702
|
5.197
|
6.986
|
9.926
|
5.226
|
1.205
|
11.803
|
7.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.630
|
-0.987
|
— | — | — | — |
1.067
|
— | — | — | — | — |
No JSON data available for plots.