Hg_chrom2_TN10mRNA_3947
Organism: Heterodera glycines Gene Locus: chr2:8988287-8991604 Feature type: polypeptideProtein Sequence
Length: 628
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 1.037 | 0.898 | 1.702 | 0.796 | 1.919 | 0.834 | 1.433 | 0.849 | 0.947 | 0.29 | 1.592 | 1.415 | 1.347 | 1.527 | 1.297 | 0.548 | 0.651 | 1.715 | 0.562 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3748
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— |
RREYRTMSDGERRKLH
|
— | — | — | — |
1-30
|
0.719
|
0.894
|
0.000
|
0.000
|
0.215
|
0.151
|
0.033
|
0.230
|
0.156
|
0.106
|
0.185
|
0.238
|
0.291
|
0.904
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007157
|
1.000
|
1.000
|
Hsc_gene_5008.t1
|
Hsc_gene_5008.t1
|
— |
P34269.2 Putative tyrosinase-like protein tyr-1 [Caenorhabditis elegans]
|
KAI1717415.1 common central domain of tyrosinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.892|GO:0008150_0.759|GO:0005575_0.714|GO:0110165_0.711|GO:0005488_0.686|GO:0016020_0.585|GO:0005622_0.580|GO:0008152_0.549|GO:0009987_0.538|GO:0043226_0.530|GO:0043229_0.507|GO:0043227_0.505
|
IPR002227+158-346_176-193_205-210_306-317_326-344_327-338+|IPR003582+533-568_533-569_534-568_576-611_576-612_577-611+|IPR008922+127-401_129-396+|IPR050316+91-605+
|
SM00254+533-569_576-612+
|
PF00264+158-346+Common_central_domain_of_tyrosinase|PF01549+533-568_576-611+ShK_domain-like
|
— |
PTHR11474+91-605+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
125-172
|
2.000
|
1-124;173-628
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
70379.330
|
7.118
|
7.000
|
21.975
|
12.102
|
46.338
|
53.662
|
12.261
|
9.713
|
52.707
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
185.122
|
67.893
|
119.334
|
103.813
|
141.042
|
1061.395
|
283.026
|
139.983
|
17.155
|
78.361
|
52.130
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
0.476
|
— |
0.409
|
2.927
|
-1.897
|
-3.031
|
1.160
|
— | — | — | — | — |