Hg_chrom2_TN10mRNA_3948
Organism: Heterodera glycines Gene Locus: chr2:8995904-8997572 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.105 | 1.057 | 0.751 | 0.57 | 1.033 | 1.271 | 0.738 | 1.033 | 1.01 | 1.675 | 0.939 | 1.458 | 1.148 | 0.715 | 1.518 | 0.767 | 1.016 | 0.689 | 1.271 | 0.608 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3749
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
59-84
|
0.999
|
— | — | — | — |
0.041
|
— | — |
0.627
|
0.241
|
0.040
|
0.498
|
0.077
|
0.104
|
0.105
|
0.080
|
0.092
|
0.352
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000790
|
3.000
|
3.000
|
Hsc_gene_2486.t2;Hsc_gene_2486.t5;Hsc_gene_2486.t6
|
Hsc_gene_2486.t1;Hsc_gene_2486.t2;Hsc_gene_2486.t4;Hsc_gene_2486.t5;Hsc_gene_2486.t6;Hsc_gene_26493.t1
|
— |
Q5UR67.1 N-glycosidase R617 [Acanthamoeba polyphaga mimivirus]
|
KAI6240044.1 Potassium channel subfamily K member 18 [Aphelenchoides fujianensis]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.922|GO:0003674_0.849|GO:0008152_0.790|GO:0003824_0.713|GO:1901135_0.693|GO:0016787_0.679|GO:0016798_0.655|GO:0016799_0.650|GO:0005575_0.643|GO:0110165_0.641|GO:0005622_0.575|GO:0016020_0.558|GO:0009987_0.536|GO:0043226_0.529|GO:0043229_0.523|GO:0005737_0.502
|
IPR012816+138-216_141-212+|IPR037238+25-219_140-217+
|
— |
PF08719+138-216+NADAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
27293.470
|
9.822
|
10.500
|
26.033
|
9.917
|
47.107
|
52.893
|
15.702
|
10.331
|
45.868
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
120.246
|
298.959
|
217.524
|
165.047
|
129.953
|
116.504
|
91.775
|
152.551
|
51.747
|
47.651
|
49.406
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.688
|
-0.994
|
-0.290
|
-0.376
|
— | — | — |
-0.591
|
— | — | — | — | — |
No JSON data available for plots.