Hg_chrom2_TN10mRNA_3950
Organism: Heterodera glycines Gene Locus: chr2:8997802-8999272 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.097 | 1.024 | 0.8 | 0.867 | 1.363 | 1.209 | 0.337 | 0.943 | 1.188 | 1.572 | 1.286 | 1.295 | 1.31 | 0.544 | 1.091 | 1.033 | 1.031 | 0.905 | 0.242 | 0.37 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3750
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.900
|
0.129
|
0.079
|
0.144
|
0.014
|
0.014
|
0.031
|
0.013
|
0.025
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003064
|
2.000
|
1.000
|
Hsc_gene_2487.t1
|
— | — |
Q61LN7.1 Nucleolar complex protein 3 homolog [Caenorhabditis briggsae]
|
KAH7722396.1 Protein C37H5.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.943|GO:0110165_0.940|GO:0016020_0.883|GO:0005622_0.878|GO:0043226_0.833|GO:0043229_0.814|GO:0043227_0.792|GO:0043231_0.764|GO:0008150_0.634|GO:0005634_0.619|GO:0043228_0.511|GO:0043232_0.511
|
IPR011501+77-172+|IPR016903+13-295+
|
— |
PF07540+77-172+Nucleolar_complex-associated_protein
|
— |
PTHR14428+13-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83
|
1.000
|
84-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
35773.340
|
8.298
|
7.000
|
28.302
|
8.176
|
50.943
|
49.057
|
15.723
|
12.579
|
45.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
540.007
|
894.641
|
778.196
|
569.592
|
458.422
|
470.646
|
394.774
|
509.163
|
936.356
|
131.975
|
476.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.430
|
-0.788
|
-0.342
|
-0.345
|
— |
-0.243
|
— | — | — | — | — |
11.541
|
— |
No JSON data available for plots.