Hg_chrom2_TN10mRNA_3951
Organism: Heterodera glycines Gene Locus: chr2:8998913-9000089 Feature type: polypeptideProtein Sequence
Length: 119
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 1.173 | 0.917 | 0.29 | 1.681 | 0.862 | 1.0 | 0.42 | 0.747 | 1.476 | 1.273 | 3.46 | 0.7 | 0.808 | 1.543 | 0.48 | 1.102 | 0.382 | 2.586 | 0.494 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3751
|
— | — |
1.333
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.657
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.784
|
0.268
|
0.041
|
0.459
|
0.048
|
0.057
|
0.059
|
0.125
|
0.053
|
0.313
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000790
|
3.000
|
3.000
|
Hsc_gene_2486.t2;Hsc_gene_2486.t5;Hsc_gene_2486.t6
|
Hsc_gene_2486.t1;Hsc_gene_2486.t2;Hsc_gene_2486.t4;Hsc_gene_2486.t5;Hsc_gene_2486.t6
|
— |
Q5UR67.1 N-glycosidase R617 [Acanthamoeba polyphaga mimivirus]
|
POB03644.1 DUF1768 domain-containing protein [Halopseudomonas oceani]
|
WP_350225394
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.908|GO:0003674_0.813|GO:0008152_0.754|GO:1901135_0.684|GO:0003824_0.675|GO:0016787_0.665|GO:0005575_0.663|GO:0110165_0.656|GO:0016798_0.650|GO:0016799_0.650|GO:0005622_0.586|GO:0016020_0.555|GO:0043226_0.540|GO:0043229_0.539|GO:0009987_0.531|GO:0005737_0.528
|
IPR012816+7-92_7-93_8-89+|IPR037238+3-98_10-94+
|
— |
PF08719+7-93+NADAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-119
|
2b3w_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
13745.780
|
8.001
|
1.500
|
31.933
|
8.403
|
50.420
|
49.580
|
16.807
|
15.126
|
42.017
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
50.436
|
96.924
|
107.740
|
67.772
|
39.306
|
95.285
|
32.245
|
65.827
|
41.662
|
0.000
|
17.855
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.653
|
-0.562
|
-0.818
|
1.292
|
-1.551
|
-0.638
|
-0.886
|
— | — | — | — | — |
No JSON data available for plots.