Hg_chrom2_TN10mRNA_3955
Organism: Heterodera glycines Gene Locus: chr2:9042791-9044654 Feature type: polypeptideProtein Sequence
Length: 406
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 0.859 | 0.896 | 0.764 | 1.232 | 0.884 | 0.997 | 1.601 | 1.259 | 1.298 | 0.821 | 1.449 | 1.779 | 0.805 | 1.458 | 0.774 | 0.686 | 0.746 | 0.758 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3755
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.389
|
0.384
|
0.041
|
0.507
|
0.241
|
0.310
|
0.445
|
0.007
|
0.217
|
0.178
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003406
|
2.000
|
1.000
|
Hsc_gene_5011.t1
|
Hsc_gene_5010.t1;Hsc_gene_5011.t1
|
— |
O57245.1 3 beta-hydroxysteroid dehydrogenase/Delta 5--;4-isomerase [Vaccinia virus Ankara]
|
KAI6184110.1 3Beta-HSD domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006694|GO:0016616
|
GO:0008150_0.935|GO:0003674_0.875|GO:0003824_0.757|GO:0005575_0.717|GO:0110165_0.700|GO:0008152_0.682|GO:0016491_0.669|GO:0044238_0.661|GO:0016614_0.655|GO:0016616_0.655|GO:0016020_0.629|GO:0005622_0.628|GO:0005737_0.590|GO:0006629_0.574|GO:0008202_0.564|GO:0009058_0.553|GO:0071944_0.533|GO:0005886_0.524|GO:0043226_0.502
|
IPR002225+6-294+|IPR036291+4-294+
|
— |
PF01073+6-294+3-beta_hydroxysteroid_dehydrogenase/isomerase_family
|
— |
PTHR43000+4-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
365-406
|
1.000
|
1-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
45680.340
|
7.676
|
7.500
|
28.079
|
12.808
|
44.828
|
55.172
|
15.764
|
12.315
|
46.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
632.512
|
254.356
|
275.972
|
1169.180
|
1352.313
|
1244.179
|
262.836
|
814.463
|
316.718
|
514.715
|
429.859
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.063
|
2.191
|
0.177
|
— |
-2.233
|
-0.721
|
-1.488
|
— | — | — | — | — |
No JSON data available for plots.