Hg_chrom2_TN10mRNA_3956
Organism: Heterodera glycines Gene Locus: chr2:9042791-9044654 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.957 | 0.87 | 0.907 | 0.688 | 1.247 | 0.895 | 1.009 | 1.621 | 1.275 | 1.314 | 0.831 | 1.467 | 1.801 | 0.815 | 1.476 | 0.677 | 0.695 | 0.718 | 0.767 | 0.66 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3755
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.391
|
0.378
|
0.031
|
0.511
|
0.230
|
0.291
|
0.423
|
0.007
|
0.220
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003406
|
2.000
|
1.000
|
Hsc_gene_5011.t1
|
Hsc_gene_5010.t1;Hsc_gene_5011.t1
|
— |
O57245.1 3 beta-hydroxysteroid dehydrogenase/Delta 5--;4-isomerase [Vaccinia virus Ankara]
|
KAI6184110.1 3Beta-HSD domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006694|GO:0016616
|
GO:0005575_0.764|GO:0008150_0.759|GO:0110165_0.749|GO:0003674_0.705|GO:0005622_0.678|GO:0016020_0.677|GO:0005737_0.641|GO:0003824_0.589|GO:0043226_0.567|GO:0043229_0.550|GO:0043227_0.535|GO:0008152_0.532|GO:0071944_0.514|GO:0044238_0.512|GO:0005886_0.506|GO:0043231_0.502
|
IPR002225+6-289+|IPR036291+2-296+
|
— |
PF01073+6-289+3-beta_hydroxysteroid_dehydrogenase/isomerase_family
|
— |
PTHR43000+4-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
360-401
|
1.000
|
1-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
45216.830
|
7.705
|
7.500
|
28.429
|
12.968
|
44.638
|
55.362
|
15.960
|
12.469
|
45.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
632.512
|
254.356
|
275.972
|
1169.180
|
1352.313
|
1244.179
|
262.836
|
814.463
|
316.718
|
514.715
|
429.859
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.063
|
2.191
|
0.177
|
— |
-2.233
|
-0.721
|
-1.488
|
— | — | — | — | — |
No JSON data available for plots.