Hg_chrom2_TN10mRNA_3958
Organism: Heterodera glycines Gene Locus: chr2:9047191-9060916 Feature type: polypeptideProtein Sequence
Length: 2,220
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 1.006 | 1.057 | 0.683 | 1.201 | 1.04 | 0.933 | 1.104 | 1.361 | 1.23 | 0.921 | 1.616 | 0.988 | 0.762 | 1.443 | 0.689 | 0.702 | 1.044 | 0.797 | 0.808 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3757
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRQK,KKALAQMAIEAEAERKARE,VRKHQEKRRRSIIHQRRRKFSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.242
|
0.269
|
0.081
|
0.659
|
0.260
|
0.265
|
0.136
|
0.090
|
0.194
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000387
|
1.000
|
7.000
|
Hsc_gene_5014.t1;Hsc_gene_5014.t2;Hsc_gene_5014.t3;Hsc_gene_5014.t4;Hsc_gene_5014.t5;Hsc_gene_5014.t6;Hsc_gene_5014.t7
|
Hsc_gene_5014.t1;Hsc_gene_5014.t2;Hsc_gene_5014.t3;Hsc_gene_5014.t4;Hsc_gene_5014.t5;Hsc_gene_5014.t6;Hsc_gene_5014.t7
|
— |
Q9C102.1 Glutamate synthase [NADH] [Schizosaccharomyces pombe 972h-]
|
KAF7637154.1 Glutamate synthase NADPH [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005506|GO:0006537|GO:0010181|GO:0015930|GO:0016040|GO:0016491|GO:0016638|GO:0016639|GO:0050660|GO:0051536
|
GO:0005575_0.859|GO:0110165_0.852|GO:0008150_0.816|GO:0005622_0.790|GO:0009987_0.740|GO:0005737_0.708|GO:0003674_0.669|GO:0008152_0.662|GO:0016020_0.652|GO:0044237_0.609|GO:0044238_0.578|GO:0003824_0.571|GO:0043226_0.554|GO:0009058_0.553|GO:0044281_0.540|GO:0050896_0.538|GO:0043229_0.534|GO:0044249_0.523|GO:0051179_0.502
|
IPR002489+1325-1508_1325-1550+|IPR002932+870-1240_873-1253+|IPR006005+1722-2208+|IPR006982+506-789+|IPR009051+1713-1866+|IPR012220+5-2219+|IPR013785+487-851_852-1288+|IPR017932+27-421_27-442+|IPR023753+1867-2191+|IPR028261+1743-1852+|IPR029055+27-441_27-446+|IPR036188+1867-1984_2002-2211+|IPR036485+1296-1568_1319-1557+|IPR051394+1701-2215+
|
— |
PF00310+27-442+Glutamine_amidotransferases_class-II|PF01493+1325-1508+GXGXG_motif|PF01645+870-1240+Conserved_region_in_glutamate_synthase|PF04898+506-789+Glutamate_synthase_central_domain|PF07992+1867-2191+Pyridine_nucleotide-disulphide_oxidoreductase|PF14691+1743-1852+Dihydroprymidine_dehydrogenase_domain_II,_4Fe-4S_cluster
|
G3DSA:2.160.20.60:FF:000001+1296-1568+Glutamate_synthase,_large_subunit|G3DSA:3.20.20.70:FF:000017+857-1277+Glutamate_synthase_[NADH],_amyloplastic|G3DSA:3.20.20.70:FF:000031+488-848+Glutamate_synthase_1_[NADH]|G3DSA:3.60.20.10:FF:000043+27-455+Glutamate_synthase_1_[NADH]_chloroplastic
|
PTHR43100+1701-2215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1654-1713
|
2.000
|
1-1653;1714-2220
|
1ofe_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
248634.030
|
7.648
|
27.500
|
28.378
|
9.550
|
45.856
|
54.144
|
15.360
|
13.018
|
48.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
8515.162
|
15046.034
|
10357.030
|
8192.691
|
8975.643
|
6820.230
|
6623.359
|
7759.780
|
9035.392
|
6561.753
|
7621.884
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.768
|
-1.014
|
-0.230
|
0.100
|
-0.382
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.