Hg_chrom2_TN10mRNA_3961
Organism: Heterodera glycines Gene Locus: chr2:9063168-9066767 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.963 | 1.463 | 1.204 | 1.142 | 0.607 | 0.509 | 0.828 | 1.325 | 1.398 | 1.208 | 0.803 | 0.974 | 1.84 | 1.019 | 1.216 | 1.372 | 0.597 | 0.853 | 0.509 | 0.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3760
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.739
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
10-30
|
0.928
|
18-59
|
0.997
|
— | — |
0.000
|
— | — |
0.344
|
0.284
|
0.400
|
0.482
|
0.135
|
0.126
|
0.081
|
0.146
|
0.078
|
0.325
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007159
|
1.000
|
1.000
|
Hsc_gene_5017.t1
|
Hsc_gene_5017.t1
|
— | — |
KAI6237259.1 N-acetyltransferase domain-containing protein [Aphelenchoides besseyi]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
— |
IPR000182+142-302_199-266+|IPR016181+73-274+
|
— |
PF00583+199-266+Acetyltransferase_(GNAT)_family
|
— |
PTHR20905+76-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
33022.700
|
8.008
|
7.000
|
24.172
|
10.596
|
45.695
|
54.305
|
13.907
|
10.265
|
55.629
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
151.193
|
244.196
|
149.998
|
255.727
|
130.083
|
114.073
|
180.986
|
123.405
|
22.683
|
195.033
|
121.169
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.932
|
— |
0.878
|
-1.008
|
— |
0.676
|
— |
0.694
|
— | — | — | — | — |
No JSON data available for plots.