SCN Proteipedia

Hg_chrom2_TN10mRNA_3962

Organism: Heterodera glycines Gene Locus: chr2:9067217-9069934 Feature type: polypeptide

Protein Sequence

Length: 427

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.817	1.416	0.554	1.938	0.937	1.021	0.836	0.82	0.989	1.076	1.065	1.378	0.716	0.721	1.29	1.405	0.845	0.71	2.342	0.827	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3761	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	30-Not_Clustered	0.622

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	—	22-43	0.975	—	—	—	—	0.000	—	—	0.030	0.111	0.003	0.148	0.310	0.185	0.304	0.005	0.262	0.778

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007160	1.000	1.000	Hsc_gene_5018.t1	Hsc_gene_5018.t1	—	Q66II0.1 Protein Wnt-11b-1 [Xenopus tropicalis]	KAI1712171.1 wnt family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005102\|GO:0005576\|GO:0007275\|GO:0016055	GO:0008150_0.958\|GO:0009987_0.871\|GO:0032502_0.838\|GO:0048856_0.837\|GO:0032501_0.824\|GO:0065007_0.813\|GO:0050789_0.801\|GO:0050794_0.785\|GO:0007275_0.771\|GO:0005575_0.765\|GO:0110165_0.762\|GO:0030154_0.747\|GO:0048869_0.747\|GO:0048731_0.739\|GO:0050896_0.723\|GO:0048513_0.716\|GO:0051716_0.679\|GO:0003674_0.657\|GO:0009888_0.656\|GO:0007154_0.650\|GO:0048518_0.644\|GO:0023052_0.637\|GO:0048522_0.627\|GO:0005488_0.618\|GO:0007165_0.617\|GO:0009653_0.595\|GO:0005515_0.588\|GO:0007166_0.577\|GO:0023051_0.555\|GO:0010646_0.545\|GO:0071944_0.535\|GO:0048583_0.529\|GO:0009966_0.516\|GO:0016020_0.512\|GO:0005622_0.504\|GO:0016055_0.502	IPR005817+60-427_61-427_62-427_123-137_142-155_194-206_287-301_345-356+\|IPR043158+367-427+	SM00097+61-427+	PF00110+62-427+wnt_family	G3DSA:3.30.2460.20:FF:000001+367-427+Wnt_homolog	PTHR12027+60-427+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-427	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.878	47824.700	8.959	23.500	23.653	10.070	48.712	51.288	14.988	8.665	52.225

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	magenta	220.960	203.991	263.567	613.010	299.928	230.391	146.984	564.925	14.447	84.817	54.658

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.450	1.326	-1.065	-0.365	-0.636	1.193	-1.799	—	5.617	—	—	—

No JSON data available for plots.

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