Hg_chrom2_TN10mRNA_3963
Organism: Heterodera glycines Gene Locus: chr2:9070374-9076617 Feature type: polypeptideProtein Sequence
Length: 576
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.505 | 1.615 | 0.758 | 1.018 | 1.186 | 1.246 | 0.744 | 1.389 | 1.273 | 1.126 | 0.868 | 0.817 | 1.64 | 0.768 | 0.957 | 1.017 | 1.11 | 0.868 | 1.335 | 1.021 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3762
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.939
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.093
|
0.053
|
0.041
|
0.150
|
0.306
|
0.232
|
0.252
|
0.004
|
0.836
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001153
|
2.000
|
3.000
|
Hsc_gene_5019.t1;Hsc_gene_5020.t1;Hsc_gene_5020.t2
|
Hsc_gene_5019.t1;Hsc_gene_5020.t1;Hsc_gene_5020.t2
|
— | — |
KAI1725788.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005272|GO:0006814|GO:0016020
|
GO:0008150_0.956|GO:0009987_0.748|GO:0003674_0.708|GO:0005575_0.645|GO:0110165_0.644|GO:0051179_0.624|GO:0006810_0.621|GO:0051234_0.621|GO:0016020_0.576|GO:0055085_0.542|GO:0006811_0.530|GO:0034220_0.528|GO:0098660_0.523|GO:0006812_0.522|GO:0030001_0.522|GO:0098655_0.521|GO:0098662_0.521|GO:0006814_0.515|GO:0035725_0.512|GO:0005215_0.510|GO:0022857_0.509|GO:0005216_0.505|GO:0015075_0.505|GO:0015267_0.505|GO:0022803_0.505
|
IPR001873+82-513_90-503_145-161_450-470_470-484_484-500+
|
— |
PF00858+90-503+Amiloride-sensitive_sodium_channel
|
— |
PTHR11690+82-513+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
542-576
|
1.000
|
1-541
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
65814.430
|
6.794
|
3.000
|
24.479
|
13.889
|
50.174
|
49.826
|
13.194
|
11.285
|
48.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
348.027
|
425.587
|
384.132
|
474.236
|
247.712
|
155.507
|
112.599
|
313.507
|
147.982
|
619.152
|
417.222
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.379
|
— |
0.413
|
-0.969
|
-0.657
|
-0.455
|
0.912
|
-1.336
|
— | — | — | — | — |
No JSON data available for plots.