Hg_chrom2_TN10mRNA_3965
Organism: Heterodera glycines Gene Locus: chr2:9076692-9080537 Feature type: polypeptideProtein Sequence
Length: 848
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 0.905 | 1.051 | 0.651 | 2.103 | 0.937 | 0.533 | 0.59 | 0.996 | 1.116 | 1.304 | 0.902 | 1.114 | 0.884 | 1.372 | 1.213 | 1.044 | 0.804 | 0.816 | 0.486 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3763
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,RKRR,KKRRTEDETEQRKNKT,RKRKEYEEEQKLKRKLA,KREEKRCENEQSKKRRTE,KKLSKTKNEGQVRRRKLN,KNERPKYSGKIKIRKRKEYEEEQKLKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.865
|
0.067
|
0.010
|
0.374
|
0.027
|
0.029
|
0.042
|
0.009
|
0.111
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007161
|
1.000
|
1.000
|
Hsc_gene_5022.t1
|
Hsc_gene_5021.t1;Hsc_gene_5021.t2
|
— | — |
CAD2200825.1 unnamed protein product [Meloidogyne enterolobii]
|
MBN2794057
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
202-524
|
2.000
|
1-201;525-848
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
96797.750
|
4.979
|
-21.000
|
34.906
|
7.901
|
57.311
|
42.689
|
16.509
|
18.396
|
46.226
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
tan
|
2276.755
|
3246.396
|
2148.378
|
2492.099
|
2857.870
|
2106.532
|
2564.108
|
1446.547
|
3210.817
|
1229.465
|
2078.616
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.826
|
-0.519
|
0.323
|
0.166
|
-0.426
|
0.294
|
-0.645
|
0.968
|
— | — | — | — | — |
No JSON data available for plots.