Hg_chrom2_TN10mRNA_3971
Organism: Heterodera glycines Gene Locus: chr2:9092115-9093703 Feature type: polypeptideProtein Sequence
Length: 275
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.719 | 0.846 | 0.86 | 0.627 | 1.091 | 0.653 | 0.823 | 1.818 | 1.455 | 1.572 | 1.047 | 1.283 | 1.313 | 0.699 | 1.187 | 0.831 | 1.013 | 0.937 | 0.559 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3768
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
20-41
|
0.952
|
— | — | — | — |
0.081
|
— | — |
0.140
|
0.799
|
0.019
|
0.398
|
0.237
|
0.101
|
0.135
|
0.070
|
0.092
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003409
|
2.000
|
1.000
|
Hsc_gene_5028.t1
|
Hsc_gene_5028.t1
|
— |
Q9DCM0.2 Persulfide dioxygenase ETHE1, mitochondrial [Mus musculus]
|
KAH7700544.1 protein ETHE1 [Aphelenchus avenae]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006749|GO:0050313
|
GO:0005575_0.793|GO:0110165_0.793|GO:0005622_0.720|GO:0008150_0.719|GO:0016020_0.695|GO:0005737_0.689|GO:0043226_0.639|GO:0043229_0.627|GO:0043227_0.614|GO:0003674_0.602|GO:0043231_0.597|GO:0003824_0.508
|
IPR001279+39-203_40-203+|IPR036866+23-257_37-236+|IPR044528+29-205+|IPR051682+26-259+
|
SM00849+39-203+
|
PF00753+40-203+Metallo-beta-lactamase_superfamily
|
G3DSA:3.60.15.10:FF:000013+25-257+Persulfide_dioxygenase_ETHE1,_mitochondrial
|
PTHR43084+26-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-275
|
4chl_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
31121.000
|
8.585
|
9.000
|
27.636
|
12.727
|
45.818
|
54.182
|
16.364
|
11.273
|
45.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
1465.626
|
2227.610
|
1475.597
|
1171.570
|
976.954
|
832.243
|
1003.473
|
1674.912
|
1044.346
|
2117.967
|
1657.844
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.824
|
-1.064
|
-0.224
|
-0.294
|
-0.217
|
0.281
|
0.904
|
-0.595
|
— | — | — | — | — |
No JSON data available for plots.