Hg_chrom2_TN10mRNA_3972
Organism: Heterodera glycines Gene Locus: chr2:9092115-9093703 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 0.738 | 0.938 | 0.684 | 1.19 | 0.712 | 0.898 | 1.786 | 1.058 | 1.555 | 1.082 | 1.167 | 1.323 | 0.763 | 1.215 | 0.85 | 0.976 | 0.902 | 0.611 | 0.934 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3768
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.160
|
0.935
|
0.023
|
0.329
|
0.050
|
0.054
|
0.035
|
0.207
|
0.072
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003409
|
2.000
|
1.000
|
Hsc_gene_5028.t1
|
Hsc_gene_5028.t1
|
— |
Q9DCM0.2 Persulfide dioxygenase ETHE1, mitochondrial [Mus musculus]
|
KAH7700544.1 protein ETHE1 [Aphelenchus avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006749|GO:0050313
|
GO:0005575_0.775|GO:0110165_0.775|GO:0005622_0.732|GO:0008150_0.714|GO:0005737_0.682|GO:0016020_0.662|GO:0043226_0.640|GO:0043229_0.629|GO:0043227_0.613|GO:0003674_0.606|GO:0043231_0.598|GO:0003824_0.518
|
IPR001279+16-180+|IPR036866+1-234_14-213+|IPR044528+6-182+|IPR051682+4-236+
|
SM00849+16-180+
|
PF00753+16-180+Metallo-beta-lactamase_superfamily
|
G3DSA:3.60.15.10:FF:000013+2-234+Persulfide_dioxygenase_ETHE1,_mitochondrial
|
PTHR43084+4-236+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-252
|
4chl_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
28360.580
|
8.066
|
6.500
|
28.968
|
12.302
|
46.825
|
53.175
|
16.667
|
12.302
|
46.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
1465.626
|
2227.610
|
1475.597
|
1171.570
|
976.954
|
832.243
|
1003.473
|
1674.912
|
1044.346
|
2117.967
|
1657.844
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.824
|
-1.064
|
-0.224
|
-0.294
|
-0.217
|
0.281
|
0.904
|
-0.595
|
— | — | — | — | — |
No JSON data available for plots.