Hg_chrom2_TN10mRNA_3973
Organism: Heterodera glycines Gene Locus: chr2:9097059-9099143 Feature type: polypeptideProtein Sequence
Length: 469
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 0.793 | 1.085 | 0.368 | 2.061 | 1.093 | 0.965 | 0.426 | 0.426 | 1.124 | 1.938 | 0.376 | 1.244 | 0.902 | 0.914 | 1.066 | 0.944 | 0.743 | 1.148 | 0.502 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3769
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
KKKKR,KRRKKK,KKEPKNKKKKGVEAKKDGQKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.241
|
0.309
|
0.008
|
0.174
|
0.839
|
0.278
|
0.378
|
0.004
|
0.166
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007165
|
1.000
|
1.000
|
Hsc_gene_5029.t1
|
Hsc_gene_5029.t1
|
— |
Q99161.2 Translocation protein SEC62 [Yarrowia lipolytica CLIB122]
|
KAI1713789.1 translocation protein sec62 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789|GO:0015031
|
GO:0005575_0.972|GO:0110165_0.969|GO:0016020_0.945|GO:0005622_0.771|GO:0071944_0.707|GO:0005886_0.699|GO:0008150_0.698|GO:0009987_0.677|GO:0051179_0.633|GO:0006810_0.625|GO:0051234_0.625|GO:0003674_0.585|GO:0043226_0.539|GO:0043229_0.516|GO:0051641_0.505|GO:0055085_0.503
|
IPR004728+1-416_99-305+
|
— |
PF03839+99-305+Translocation_protein_Sec62
|
— |
PTHR12443+1-416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;96-183;318-469
|
2.000
|
41-95;184-317
|
7kam_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
52816.080
|
5.757
|
-3.000
|
36.461
|
8.529
|
57.356
|
42.644
|
18.124
|
18.337
|
46.695
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
5290.283
|
4997.070
|
3420.230
|
2203.841
|
2917.876
|
4254.596
|
2864.735
|
4704.687
|
14757.381
|
2565.815
|
7790.772
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.776
|
-1.318
|
-0.526
|
0.373
|
0.559
|
-0.560
|
— |
-0.574
|
2.388
|
-2.583
|
— | — | — |
No JSON data available for plots.