SCN Proteipedia

Hg_chrom2_TN10mRNA_3974

Organism: Heterodera glycines Gene Locus: chr2:9099572-9102959 Feature type: polypeptide

Protein Sequence

Length: 669

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.939	1.251	0.924	0.206	1.295	1.61	0.623	1.42	1.163	1.434	0.272	1.759	1.785	0.747	1.495	0.94	0.613	0.793	0.92	1.099	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3770	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum\|golgi_apparatus	—	RRRVFGVSTVAALMRRIGR	45-73	0.993	—	—	—	—	0.000	—	—	0.291	0.111	0.005	0.159	0.842	0.265	0.731	0.015	0.359	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007166	1.000	1.000	Hsc_gene_5030.t1	Hsc_gene_5030.t1	—	Q8CIV2.2 Membralin [Mus musculus]	KAI1712190.1 tumor-associated protein domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.961\|GO:0005575_0.920\|GO:0110165_0.911\|GO:0016020_0.874\|GO:0071944_0.874\|GO:0005886_0.869\|GO:0065007_0.839\|GO:0009987_0.824\|GO:0050789_0.810\|GO:0005622_0.788\|GO:0008152_0.757\|GO:0043226_0.755\|GO:0005737_0.748\|GO:0044238_0.741\|GO:0043229_0.732\|GO:0043227_0.714\|GO:0019222_0.704\|GO:0050896_0.693\|GO:0080090_0.690\|GO:0043231_0.688\|GO:0050794_0.685\|GO:0005773_0.678\|GO:0051716_0.673\|GO:0012505_0.660\|GO:0042221_0.625\|GO:0043170_0.624\|GO:0048518_0.620\|GO:0006950_0.619\|GO:0019538_0.618\|GO:0048522_0.608\|GO:0048583_0.602\|GO:0009056_0.598\|GO:0033554_0.595\|GO:0060255_0.594\|GO:1901698_0.594\|GO:0009893_0.589\|GO:0009057_0.588\|GO:0048584_0.585\|GO:0051246_0.585\|GO:0009894_0.584\|GO:0010604_0.583\|GO:0006508_0.581\|GO:0080134_0.581\|GO:0005783_0.580\|GO:0030163_0.580\|GO:0042176_0.576\|GO:0009896_0.575\|GO:0010498_0.575\|GO:0034976_0.575\|GO:0051247_0.575\|GO:0051603_0.575\|GO:0030162_0.571\|GO:0036503_0.571\|GO:0045732_0.571\|GO:0045862_0.571\|GO:0061136_0.571\|GO:0080135_0.571\|GO:1901800_0.571\|GO:1903050_0.571\|GO:1903052_0.571\|GO:1904292_0.571\|GO:1904294_0.571\|GO:1905897_0.571\|GO:1905898_0.571	IPR019144+42-138_256-473+	—	PF09746+42-138_256-473+Tumour-associated_protein	—	PTHR21650+39-565+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	600-669	1.000	1-599	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.610	77049.040	5.103	-15.500	24.813	14.200	46.786	53.214	11.958	12.855	43.797

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	midnightblue	1967.918	3395.410	2006.317	1631.813	1821.953	2183.395	2761.833	2164.501	1666.861	1372.537	1498.676

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.989	-1.194	-0.189	0.127	0.276	0.349	—	0.494	—	—	—	—	—

No JSON data available for plots.

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